RNA id: XM_043258628.1


Basic Information

Item Value
RNA id XM_043258628.1
length 394
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC122358767
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2390878 ~ 2391452 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAGGGTTCGCAGATGGATAGATACATGTGCACGAGGCGAATGTGAAAAGAAGTTTgcgtaatgcatttattcagtttgcggttaaagaaataaaaggaggggagaaaaaatattatggaTGAAGAAAATCGAGCAGATCCCCCGAACTGGATAAAGCAGCACGCCGTATATCAAGAGTTGATGCATTTAGATGTCGGAGACAGTGCTCAAGTATATGGCTTTCTGGTGTACATGGACCTGACGGAAGtgcGTAAATGGACAGAGGTGGTTGGAGTTCCCTGTCCGGAGTTACAGGCGGTTCTTCTGGAGGCTCGAGAGAAGGAAGGAGAAACAGTCCAGATGATCTACCCTCTGCCTTCACACAGATCCATCAGACACAGAGAGTAGGACACA

Function

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation biological_process
GO:0000213 tRNA-intron endonuclease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13075 lncRNA upstream 69691 2288286 ~ 2321187 (+) True G8716
TU13076 lncRNA upstream 100838 2288825 ~ 2290040 (+) True G8717
TU13062 lncRNA upstream 102662 2287346 ~ 2288216 (+) False sgip1b
TU13050 lncRNA upstream 137287 2249222 ~ 2253591 (+) True G8703
TU13054 lncRNA upstream 163627 2226905 ~ 2227251 (+) True G8707
TU13102 lncRNA downstream 52136 2443588 ~ 2445200 (+) True G8737
TU13085 lncRNA downstream 120170 2511622 ~ 2609519 (+) True G8724
TU13145 lncRNA downstream 221070 2612522 ~ 2613104 (+) True G8764
XR_006252229.1 lncRNA downstream 225755 2617207 ~ 2618878 (+) False LOC122355548
TU13126 lncRNA downstream 225816 2617268 ~ 2669597 (+) True LOC122355548
XM_043258538.1 mRNA upstream 63435 2322711 ~ 2327443 (+) True LOC122358683
XM_043224306.1 mRNA upstream 74775 2309537 ~ 2316103 (+) True bcl6ab
XM_043220819.1 mRNA upstream 97383 2291463 ~ 2293495 (+) True LOC122326129
XM_043257962.1 mRNA upstream 102706 2270679 ~ 2288172 (+) True sgip1b
XM_043257912.1 mRNA upstream 125353 2213103 ~ 2265525 (+) True pde4bb
XM_043258526.1 mRNA downstream 15290 2406742 ~ 2419955 (+) False LOC122358652
XM_043258523.1 mRNA downstream 19717 2411169 ~ 2419955 (+) True LOC122358652
XM_043258550.1 mRNA downstream 36105 2427557 ~ 2431457 (+) True LOC122358704
XM_043261741.1 mRNA downstream 62398 2453850 ~ 2461222 (+) True LOC122360901
XM_043261780.1 mRNA downstream 104491 2495943 ~ 2510010 (+) True LOC122360938
TU13065 other upstream 115743 2270681 ~ 2275135 (+) False sgip1b
XR_006252584.1 other upstream 201513 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other upstream 201513 2178766 ~ 2189365 (+) False LOC122358138
XR_006252350.1 other upstream 836764 1544773 ~ 1554114 (+) False rc3h1b
TU12491 other upstream 1562669 799932 ~ 828209 (+) False st6galnac5a
TU13086 other downstream 7502 2398954 ~ 2401745 (+) True G8725
XR_006252635.1 other downstream 19713 2411165 ~ 2419955 (+) False LOC122358652
TU13121 other downstream 156661 2548113 ~ 2555321 (+) False zgc:55943
TU13123 other downstream 158440 2549892 ~ 2555321 (+) False zgc:55943
TU13124 other downstream 158440 2549892 ~ 2555321 (+) True zgc:55943

Expression Profile