RNA id: XM_043260111.1


Basic Information

Item Value
RNA id XM_043260111.1
length 1822
RNA type mRNA
GC content 0.52
exon number 4
gene id tubb2
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3993391 ~ 3997726 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAATAACTTGAATCAAATCAATCGACAGCGTGAACGCAGAGTCAGCGTTTGTGACGGAAGAACACGCGATGCTGCAGCACGTCGTCCACTGCGTCAAAGACGCGCCTCGTGATTGGCTGCCGGCGAGAGACGGGAGAGGAGCTCGAGGAGATCAGAGCCGCATCAGCTGCAGACACGCGCCGCATCCGCATCCTCACACAGCAGCACAATGAGGGAAATCGTACACATTCAGGCCGGACAGTGTGGCAACCAGATCGGTGCCAAGTTCTGGGAGGTGATCAGTGATGAACACGGAATCGACCCCACTGGCAGTTATCAAGGGGACAGCGAACTGCAGCTGGAGAggataaatgtttattacaatgaGGCAACTGGAAGCAAATTTGTCCCTCGCGCCATCCTGGTGGACCTGGAGCCTGGCACCATGGACTCGGTCCGCTCTGGCCCATTTGGACAGATCTTCAGGCCGGATAATTTTGTGTTTGGTCAAAGCGGAGCTGGGAACAATTGGGCCAAAGGCCACTACACAGAGGGAGCAGAGCTAGTAGACTCAGTTCTGGATGTGGTACGCAAGGAGTCTGAGAACTGTGACTGCCTGCAGGGCTTCCAGCTCACTCACTCCCTGGGCGGAGGCACCGGTTCTGGGATGGGCACCCTCCTCATCAGCAAGATCCGTGAGGAGTACCCCGACCGTATCATGAACACTTTCAGCGTCATGCCTTCCCCCAAAGTGTCTGACACAGTGGTGGAGCCCTACAATGCCACGCTCTCTGTGCACCAACTGGTGGAGAACACAGACGAGACCTTTAGCATCGACAACGAAGCTCTCTACGACATCTGCTTCCGCACACTTAAACTCACCACTCCTACTTACGGCGACCTGAACCACCTTGTTTCAGCAACCATGAGTGGAGTCACCACCTGCCTGCGATTCCCAGGTCAACTTAACGCCGACCTCCGCAAGCTGGCAGTGAACATGGTGCCCTTTCCTCGCCTCCACTTCTTCATGCCCGGATTTGCGCCCCTGACAAGTCGTGGTAGCCAGCAATACCGTGCTCTTTCAGTACCAGAGCTAACGCAACAGATGTTTGACGCCAAGAACATGATGGCAGCCTGCGACCCGCGACACGGACGCTACCTCACCGTGGCAGCCATCTTCCGTGGACGCATGTCCATGAAGGAAGTGGACGAGCAAATGCTGAGCGTCCAGAACAAGAACAGCAGCTATTTTGTCGAATGGATCCCAAATAACGTCAAGACGGCAGTCTGCGACATCCCGCCACGTGGGCTCAAAATGTCCGCCACGTTCATCGGCAACAGCACAGCCATTCAAGAGCTATTCCGCAGGATTTCAGAGCAGTTCACGGCCATGTTCAGACGCAAGGCTTTCCTGCACTGGTACACTGGTGAGGGAATGGATGAGATGGAGTTCACAGAGGCGGAAAGCAATATGAATGACCTGGTCTCTGAGTACCAGCAGTACCAAGATGCCACCGCTGACGAAATGGGCGAGTATGAGGAGGACGATCTTGAAGACGAGGAAGACGCACGCCATTGAAACAGCTGATAGCCAAGTAGACGTAGTTTTGAAATCCATTGCTTTTAGTTGATCAGAAAATTTCCATAGCAATGCAAACAGTGACGCTACGCCATAATTCAAAAGGTGCTACTTGTGTTTAATTGATGTTCAGGAAAGATACAAGTTAATAGTCATTCAGTGAACAGCGATCAATCCATCTTGGGGAGGTACATTAAGACATGTTTTGTAACATATGCTTCAAACTGCAGttgccaaataaaataaagtgatcaCTAATATAAA

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13810 lncRNA upstream 76908 3886082 ~ 3916483 (+) True G9241
TU13796 lncRNA upstream 203052 3787000 ~ 3790339 (+) False LOC122355245
TU13804 lncRNA upstream 208096 3784917 ~ 3785295 (+) True G9235
TU13803 lncRNA upstream 208724 3784339 ~ 3784667 (+) True G9234
TU13801 lncRNA upstream 212613 3780540 ~ 3780778 (+) True G9232
TU13901 lncRNA downstream 15380 4013106 ~ 4021316 (+) True G9302
TU13906 lncRNA downstream 17724 4015450 ~ 4019284 (+) False G9304
TU13907 lncRNA downstream 17724 4015450 ~ 4060976 (+) True G9304
TU13909 lncRNA downstream 21613 4019339 ~ 4019715 (+) True G9305
TU14012 lncRNA downstream 225865 4223591 ~ 4224111 (+) True G9362
XM_043258723.1 mRNA upstream 1848 3951283 ~ 3991543 (+) True slc22a23
XM_043254140.1 mRNA upstream 117665 3813313 ~ 3875726 (+) True pth1r
XM_043253319.1 mRNA upstream 203758 3756171 ~ 3789633 (+) False LOC122355245
XM_043253327.1 mRNA upstream 203758 3756171 ~ 3789633 (+) False LOC122355245
XM_043253336.1 mRNA upstream 203758 3756171 ~ 3789633 (+) True LOC122355245
XM_043217015.1 mRNA downstream 56298 4054024 ~ 4148291 (+) False LOC122323258
XM_043217007.1 mRNA downstream 56299 4054025 ~ 4148291 (+) False LOC122323258
XM_043216955.1 mRNA downstream 56307 4054033 ~ 4149787 (+) True LOC122323258
XM_043216993.1 mRNA downstream 56307 4054033 ~ 4149787 (+) False LOC122323258
XM_043216974.1 mRNA downstream 56308 4054034 ~ 4149787 (+) False LOC122323258
TU13731 other upstream 314457 3676425 ~ 3678934 (+) True G9173
TU13709 other upstream 376348 3615482 ~ 3617043 (+) True G9154
XR_006252450.1 other upstream 1253484 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 1303764 2675370 ~ 2689627 (+) False LOC122356587
TU13151 other upstream 1356805 2635241 ~ 2636586 (+) True G8768
TU14011 other downstream 224513 4222239 ~ 4223112 (+) True G9361
TU14081 other downstream 566171 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 581548 4579274 ~ 4588478 (+) True mylk4a
TU14280 other downstream 900672 4898398 ~ 4899286 (+) False LOC122361055
TU14284 other downstream 911403 4909129 ~ 4909798 (+) False LOC122355892

Expression Profile