RNA id: XM_043260653.1


Basic Information

Item Value
RNA id XM_043260653.1
length 1127
RNA type mRNA
GC content 0.50
exon number 7
gene id uck2b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1997438 ~ 2001435 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGAGAGTGTATTATTAGAATAGCGACACACTCCCGGGCTCACACTGCAAGCATGGCTGGCGACAGCGAAACACATCTTAAGGACAGAGCGGAGGACGGCCACAGCATCCGACAGCCGTTCCTCATCGGTGTGGCCGGAGGCACCGCCAGCGGAAAGTCTTCAGTATGTGAGAAGATCATGGAGCTGCTGGGACAGAATAAGATTGACCGTCACCAGCGGCAGGTGGTCATCCTCAGTCAAGACAGCTTTTACAGGGAGCTCACGCCTGAACAGAAAGCCAAAGCGCTCAAGGGCCAGTTCAACTCCGATCACCCAGATGCTTTCGACAACGAGCTGGTCATGAAGACTCTGCGTGACATCATTCAGGGGGAGACCGTGCACATCCCGGTGTATGACTTTGTTACCCATTCCAGGAAGGATGAGTTCGTGACCGTGTATCCAGCGGATGTGGTTCTCTTTGAGGGGATTCTCATGTTCTACTCGCAGGATATTCGAGATCTGTTCCAAATGAAGCTGTTCGTGGACACAGACCCAGACACGCGTCTCTCGAGAAGAGTGTTGCGGGACATCAGCGAGAGAGGCCGAGAGTTGGAGCAGGTTCTGAACCAGTACATCACCTTCGTGAAGCCAGCCTTTGAGGAGTTCTGTCTCCCTACCAAAAAGTACGCAGACGTCATCATCCCCCGAGGAGCAGACAATCTCGTGGCTATTAACCTGATTGTGCAGCATATCCAGGATATCCTGAACGGAGGATTCACCAAACGACAGAGCGGTTTTCAGAACGGCCATGGAACCCCAAGACAAAGACGGCCCTCGGAGTCGAGTCGACCCCACTGACCTTACTGTGGCCCTTCCCTCCATTGAGGAGAGGGCAGAACTGAATAATCGCAGTGTACATCCCATTCATCCAATGACAATGAGGGGATGCAGGAGCTGAAATGCCTTttgttattgtcattattatttgaattttacatttgaaatgttgttGTCGTCGTCTTGGATAATTGTTTGCCGTTACAGGGTTTTGAATGTGCTATATGTTTGATTGCACTCTCAGCCTGTCCTGTCAGCATGTCTATATGCTTTCTTAGCtacccaaaaaataaatgaatagtttggaaa

Function

GO:

id name namespace
GO:0044206 UMP salvage biological_process
GO:0044211 CTP salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004849 uridine kinase activity molecular_function

KEGG:

id description
K00876 udk, UCK; uridine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252239.1 lncRNA upstream 49076 1947128 ~ 1948362 (+) True LOC122355709
TU12886 lncRNA upstream 60679 1935914 ~ 1936759 (+) False arl14
XR_006253155.1 lncRNA upstream 67871 1925860 ~ 1929567 (+) True LOC122362698
TU12891 lncRNA upstream 75215 1919412 ~ 1922223 (+) True G8586
TU12890 lncRNA upstream 78125 1918706 ~ 1919313 (+) True G8585
TU13006 lncRNA downstream 51876 2053311 ~ 2055730 (+) True G8670
TU13034 lncRNA downstream 169161 2170596 ~ 2170820 (+) True G8691
TU13035 lncRNA downstream 185922 2187357 ~ 2191448 (+) False LOC122358138
TU13045 lncRNA downstream 210318 2211753 ~ 2212073 (+) True G8700
TU13046 lncRNA downstream 210823 2212258 ~ 2212609 (+) True G8701
XM_043260645.1 mRNA upstream 5954 1987329 ~ 1991484 (+) True zte38
XM_043260666.1 mRNA upstream 10347 1983241 ~ 1987091 (+) True prdx1
XM_043260676.1 mRNA upstream 10347 1983324 ~ 1987091 (+) False prdx1
XM_043261137.1 mRNA upstream 25955 1957176 ~ 1971483 (+) False ipo13a
XM_043257142.1 mRNA downstream 656 2002091 ~ 2004413 (+) False czib
XM_043257160.1 mRNA downstream 693 2002128 ~ 2004413 (+) False czib
XM_043257151.1 mRNA downstream 714 2002149 ~ 2004413 (+) True czib
XM_043257091.1 mRNA downstream 3761 2005196 ~ 2017031 (+) True scp2a
XM_043257124.1 mRNA downstream 37472 2038907 ~ 2052126 (+) True LOC122357653
XR_006252350.1 other upstream 443324 1544773 ~ 1554114 (+) False rc3h1b
TU12491 other upstream 1169229 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 1547419 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 1547419 447162 ~ 450019 (+) False LOC122360757
TU12245 other upstream 1774395 222045 ~ 223043 (+) False G8167
XR_006252584.1 other downstream 177331 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 177331 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 269246 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 397519 2398954 ~ 2401745 (+) True G8725
XR_006252635.1 other downstream 409730 2411165 ~ 2419955 (+) False LOC122358652

Expression Profile