RNA id: XM_043261096.1


Basic Information

Item Value
RNA id XM_043261096.1
length 2740
RNA type mRNA
GC content 0.49
exon number 9
gene id serbp1b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3575656 ~ 3584040 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACTACACCCCCCATATGGCGCGAAAGCTGTAATGTCCCGGATATTGAGAGCGCCGGAAGAGAAGCAGGTGTCTTCCTTGGCCATCTTGTGGTTGTCCACCGTGAGCCGTTCGCTCGAAGCCTCGAAGAATCGGAGGAGAATCCCGTTGTTGGGGCGTCATCATGCCGGGGCATCTGCAGGACGGCTTCGGCTGCGTCGTTACCAATCGGTTCGACCAGCTATTGGACGACGAATCCGACCCCTTCGAGATATTAAAGGCGGCCGAGAACAAGAAGAAAGATGCGGCCGCGTCAGGCGGCTCGAAGACGGCGGCTCAAGCCGCAAAACAGCCAAAGAAAGAGTCCCAGAAAGACAGGAAAAATACAGCGCAGGAGAAGAAAGAAGACACCCAGACCCCCGTGCCGCTCAAGAAAGAGGGCATGAGGAGGGTTGGCCGAAGGCCGGAGCAGCAGGGTCAGACCAGTTCCCAGCACCAGGGAGGTCAAGGAGAGGCTCGGCCCGGCGACAGGCGACCCGACAGACGACCTCCTCGCGAACGACGCTTTGATAAAGCAGCTGATGAGAAGCCGGAGGCGGGCGAGTTCCCTGCGGACAAGCCGATGGGAGACAAGCCCTCTCGAGGACGCGGAGCAGGCCGCGGGGCCAGAGGAGGCCGAGGGAGAGGCATGGGGCGCGGAGATGGCTTCGATTCCCGGGGCAAGCGGGACTTTGACAGACACAGCGGCAACGACAAATCTCGACAGAAAGGAGAGGAGAAGCGTGGAGGGAGCGGCTTGCACAACTGGGGCAATGTGAAGGAAGAAGCCAGTGAGCTTGATCAGTCTGCAGCACCGGAGCCTGCTCCCGAGGGTGAAGATCACGCTCCTGCCAACTCCGAAAACAAGGAGAATGAAGTAGAGGAGGTGAAGGATGAAGGTCCTAAGGAAATGACACTGGATGAATGGAAGGCCATGCAAGACAAAGAACGCTCCAAAGTCGAGTTCAACATCCGCAAGCCCAACGAGGGCAACGATGGCCAGTGGAAGAAGGGCTACGTACTGCACAAGTCAAAGAGCGAGGAGGTCGGCACGCGGCACGCTGGATCTGTGATTGAAGCTGGAGATGTTGATCCTGACTCATTCCAAAAGGGTGACGAGGGTGGAGATCACCACTTCCGTAAGCCCGCCAACGATATCACCTCGCAGCTGGAGATCAACTTCGGAGACTTGGGTCGGCCGGGCCGCGGCCGCGGAGGATCTCGTGGAGGACGGGGAGGTCGTGGAGGAGGAGGCGGAGGAGGACGGCCGGGACGAGGCGGGGGCAGATCTGAGAAGGGTGGAGGCGTTTCCGTTCCCAACGTGGACGATCCCGAGGCTTTTCCAGCCCTGGCTTAAACCTCAGCTCCGCCTACCGAACCTTCCTCCAGGCCCCGCCCCTCCTCTTCGACGCTTGCATGCTTACGGATCGATCGACCATAGAAACCAGAAAAGAGAAACACACGAGACTGTCATCCATACATACACTGAGAACTGACTTTTACCTgcggaaaaacacaaaaaggacTTCTTGTTACACTGAAGCAAATTATGGGTAGAGGTTTTGTATTTAGAGACACGATAGCAGGGATGttcatacagtattttttttcccttttttccaGAGATTATGCATTCgccataaatatttttttatcgcTGCTTGAATGTATGCATTTTCGAGATAGGATGGAGGTGTGTTGTGAACGCTTGCGCTTCGGTCGGCGTGTAAAAGAACACACTCTCAATGGCTCTACCAAAAGCAGAAcgtttcgttttttgtttttttttttttttttttttctttttctctccaccGAGTGAGAATACGAGACTCGTAGTGACGATCTTACTATTAACACATATACATGAATAATGTATATcgactattttaaatgttttgaaagacagCTCTAAGGTCAAGCTACCCTCCTGTCGtttggattttttatttttatttttattttttatttcttttcttgaCCGGTAGCAAGAAGCTAATGCGTCGTCTTGATCTTGCTTTGGTGTTTTCTGTCGTCCTCTGCTGGACCTGTGATATTAGTATGCATAGTTGTCTTTGTTCCTCAGAGAGATTATTTCCTCATCTTGTTGAAGCACCCAGGGCTCAATGGAGATCCAGGCTGGTCCTTGTTAAGTTCATCTCTTAGAAACCTTAGGACCACTTTCTGAAATGTAAACGTGGGtgattgatgtgtgtgtgtgtgtgtgtgcatgtgcgtgtgtgagagtttaacctgtttttaaaaactcatcATCTGCCACAAGTTTATTTTCCTGAGCTTAGATGGTAAGTTTCGGCAAGTCATGTTCTTAACATGaagttttattgaatttttagcGAGTTTTTCTCTAGCTGAGGTTGTTGACATATCTTGCACTTAGATTATGGTGACGTTTGAAATCTAGCTACTAAGCACGTGGTCTATTTGCATCAGtaccatttgtttattttttattcctcCTGTGATCTTTgcggtgtttttattttttaattattactatgaTGGCACTACTGCTTgcgttttctgaaaaaaaaaaaattaaataaaaataaatgtgtaattcaGGGTGGGACAACAGTGTGCTGCGAAAGAAAAGTTGGAACCAGCTTCTTATGTATGTGAAATAGCGAGACCTCCGAGTGTGACGGCCGATGTACTCTGTATTCATAGGAGGAGGGACAATAAAATGGAAGACGACACTA

Function

GO:

id name namespace
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG:

id description
K13199 SERBP1; plasminogen activator inhibitor 1 RNA-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13693 lncRNA upstream 2581 3572437 ~ 3573075 (+) True G9142
TU13692 lncRNA upstream 11417 3563708 ~ 3564239 (+) True G9141
TU13665 lncRNA upstream 51085 3523270 ~ 3524571 (+) True G9130
TU13515 lncRNA upstream 410833 3156600 ~ 3164823 (+) False gpr158b
TU13511 lncRNA upstream 454603 3116848 ~ 3121053 (+) True G9022
TU13801 lncRNA downstream 196500 3780540 ~ 3780778 (+) True G9232
TU13803 lncRNA downstream 200299 3784339 ~ 3784667 (+) True G9234
TU13804 lncRNA downstream 200877 3784917 ~ 3785295 (+) True G9235
TU13796 lncRNA downstream 202960 3787000 ~ 3790339 (+) False LOC122355245
TU13810 lncRNA downstream 302042 3886082 ~ 3916483 (+) True G9241
XM_043253654.1 mRNA upstream 12786 3550235 ~ 3562870 (+) True zyg11l
XM_043253664.1 mRNA upstream 12786 3550235 ~ 3562870 (+) False zyg11l
XM_043253680.1 mRNA upstream 12786 3550235 ~ 3562870 (+) False zyg11l
XM_043253673.1 mRNA upstream 13149 3550235 ~ 3562507 (+) False zyg11l
XM_043260785.1 mRNA upstream 52880 3512893 ~ 3522776 (+) False guk1a
XM_043264326.1 mRNA downstream 1301 3585341 ~ 3590132 (+) True LOC122362766
XM_043264332.1 mRNA downstream 1301 3585341 ~ 3590132 (+) False LOC122362766
XM_043264309.1 mRNA downstream 73975 3658015 ~ 3664392 (+) True usp14
XM_043253319.1 mRNA downstream 172131 3756171 ~ 3789633 (+) False LOC122355245
XM_043253327.1 mRNA downstream 172131 3756171 ~ 3789633 (+) False LOC122355245
XR_006252450.1 other upstream 835749 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 886029 2675370 ~ 2689627 (+) False LOC122356587
TU13150 other upstream 939070 2635241 ~ 2636586 (+) False G8768
TU13151 other upstream 939070 2635241 ~ 2636586 (+) True G8768
XR_006247877.1 other upstream 957207 2618316 ~ 2618449 (+) True LOC122329004
TU13709 other downstream 31442 3615482 ~ 3617043 (+) True G9154
TU13731 other downstream 92385 3676425 ~ 3678934 (+) True G9173
TU14011 other downstream 638199 4222239 ~ 4223112 (+) True G9361
TU14081 other downstream 979857 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 995234 4579274 ~ 4588478 (+) True mylk4a

Expression Profile