RNA id: XM_043261438.1


Basic Information

Item Value
RNA id XM_043261438.1
length 3905
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC122360630
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1440938 ~ 1447899 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGGAATACAGGTAACTTAGAGGAAAAAACAACGGCGATCACACGACACTGACTTCAGCTTCCGGGTGTGGAAGGGATTTGATGATTTTTTGGGGGGTACGTTCAGCAGACCTAAACATTCTGAAACGCGAACAgctttttattactattattattttgttgctaTTAAGCGTATTTTAACTTTTACACACAATGCGCAACTTTTCAAATCGCTGAAAATATTATCTCGGCGCTTGCTGtggaattttaatatttttttttttttttttttttttaaatggtcaaaGACGTAGGACCGACgtgtatatgcatgtttttgacCCATGGAGGCTGCCTGGGTTAATCCATTATGATGTAACAAAGGGAATTCCCGAGAGATTTTTTCCTCCCAATAAAACGGCACCGCATCCAGCCTGTTATAAAAAATAGAGAAACTTGAAAGAAACGTATGCTCACACGCAATAGAAATAAATTGTCTCCTCAGGTTCATCACTGCCTGTGCTTCAGGTTTCAGTCATGATAACAAGAAGCTGTCAGGAAGAGGATGGAGCTGGTTGCCCTGGTAACCTGAAGTGTTTTGCTCTTGGCACAGTGGGAGAGAAAGTGTTGCATTATTGCTCAGTGTGTTAATGGGGAAGATAGTGCAACAACAACCAAGTGTATTACCAGAAATGTGGTGCATAGGAATGTTCGTGCCAAAGTCTCGTTAAGTATTCTACAGTCTTTGGTGTGTACAGGGTCATTATTTAGTGACTCTGTTTCGCCAGTAGATGGAGACAAGTGACGGTCTTCATGATCGAGTCATTTAGTCATTCATTCAGCACTGATACAATGCCACTGTGCTACTTGGAAACACTGCAGTTAGGCAGGTAGGATGGTCTATCATAGCCCTCTGACTGAAGAATATGATTGAATGGATTTTATGATCCTACGCCTGGCATAGatgatataaatgcatacaaatttAGAACCTATTGATTGCTATTGGAATGTAAACAGACTTTCAGGCAGCGCAACAAAACCCCAATCATCTacactacattaaaaaaagttattgtaattttttgtcatatttttacaGGTTTAACGGAACACAATGGAAATATTTGACCCCTCCGGTTGGCATTCACGGCATTAAACGGAGCTGAACGTACTTCACTTCTGGACAAACATATGGGGAAGTTCTGTTTTGAGAGATCTACCGAGTGTTGTACATGCTGGGGTTCTCCTGAGACGCTGTATTTTATGCTTCATATTTATCATTAAACTTTGATTAAACTAAGAAACTGGAGAATGAAATCCATGTTTTAACTGGACATTCCATAGGCATGatggtattttatatattttatatcactgCACACTTAAACCTACCTAACTTTCTGCATGTTTAGGTCATAAAACTTCATCCTGTATAATCTCTATGAGCTCGGGGACCAAAAATGTCcaaataatgtcaaaatttaGTAGTATTCCCATCCTCGACAAAGAATACTAACGTAATAAataccaggtacacacacacacacacacacacacacacacacacacacaaccaacACTACATTACATCTGCAGTACATTTAGCAAAAACGTGTATGTAATGCATTCTAGATAAAACTGAGATAAAGTTCTACTGATATTTTGCAGTTAAATGCTGATTTTTAATGGCTAACGTAACATCATGAAAAATCATTGATGAGCTGCAGAATACATTAAGCAACACAATGgagttttctcatttatttagactgactgaaatgcattttttaaaataattgtcatGTCTTGTGAGTGTAACACCCGCCATAAGTCCTGATGGCCTCTAGTGGCTACCCGCGAAACTGCATCGCATCGAGATTTCGTCCTCACTGATGGTTCCCAGCGGCCATGTGTTAATTATTTTTCCACACCTAACTTTTCCGCTTTCCTTCAACAAAACGCAAAAACAAAGGCAGTCATTAGGGAACTTTATGGTGTTGTGAAACCAGTCTTTACACAGCAGGGAGGAAGAATGGACcagttttaattctttattacTTAAAGTTAGTGCATCACAGAATGTGGGGAGGCTTTGTCACTGTTTTTCTCAGACCGACAATCACGGTTATGCAACGCTTGTTTTAGATATCCTTGTAGATCAACAATATCCTACTACGCACGGATATTAATTACAGATGTCGTTTTAAATATTAGTGCAAATGTAAACATGCACCAAGTGATTACTTTAAATATCCACTGCAGAGGATACGACATGTTTTACCAGAACCACAGTCCAGATGTTGTGAGGAGAGGGGATGTGATGGAGTATTACAGCAACGGATTCTGCAGAGGCAGCGGTGAAGAAAGGACACTCAAGGTCACGTTGCTTGGATATAAGGTcatagaggaaaagacaaagTTTACTGTCTACAAGATCTTAGTGAAGCGTGCACCAGAAGAGAGCTGGCACATTTTTAGACGATACACAGACTTCTCTCAGCTACACGACAAGCTCAAGGAGGTGTTTCCTTCGTTTGACTTTGTCCTACCGCCCAAACGTTGGTTCAACAACTTCAGCGCTGAATTTCTAGACGAGAGACAGCTGGGCCTACAAAACTTTCTACAAAACCTGGTTGCCCATAAAGATGTGCGAAAAAGTGAGGCGGTCCGAGAATTCCTGCGTCTGGAAGACCCACCCTCTGCTTCTGACGATATTAGAGAAAGATGGGCCTACTGCGAGACACTGGGAGCAACCAACTGTTGCCTTCGAAGAGACTTAATGGACGTTGGGAGAGAGACTGAGTCCCTGAGAAATGCCTTGCTGCACAAAGAGCTCCAAATTAGCCAGCCTGAGAGAACAAAGAAAACCCAAGAGGAACTGGACAGAGAGCCCCAAGAAGCTTTAACAGCACAGGAATATAAAGCGGAGCGAGACGCCCACAGGAGACCAAATAAAAGTCCTGAACTGGGGTTCATAAGGAGTCATGGAGCATGCTGGTGCGGATCAGCAACCGACAGTCCAGAAAAGCACGCTTCCAAGAACccaatcaaataaattaacagAAAGGATATACGAGAGCGCTTTCTTCAAATCTTCTGTTTGTTCTTAGTAATAAGaacagaaaagctttttttttgtttaatctgGATATTTCAAATCCGATTGATGCCAGATAATGATTCTCGGAGCACAAACGCTTTTTAATGAGgtaactgaaaagaaaaacgtTTTAATGACGTTGGTGAGTAAATGCGTGATTCTATAAGGTTTGTTTTGTAGGGAGTTTATAGGACAGCCGCGTCAAAACCCACACTTTGGACTATAGCAGCCAAAAAGAAACATCGCTTTGTACAGTTTTGTACACAATTGTCTGTTCATTACCCAGATTTTTGACTTCTGTTTTGGATTACTCACATTTGGGAATCGGCTTTGAGATTTGGGTTGCGGAATAAATTGCTACGCTTGGATTCTTCTGATTCATCCCCGGACATGATCACAAATGGGTCATCAAGCCAGGAACCGTAAAGCTTCTTggaaaaagaaaccaaacttcttggaaaaagaataaaaaaatacttctatGTAGTACTTATCTGgatgttttattcatgcatgTATCATATGTGGTAGAGATATTTTCTGTCACGTGTTTAATGTAGTGCAGCTGGTTCTGCGCAGCTGGAATCTGTCTACACAACATGTCAGTGTTGACCGGCAGGACCTTTCTGGTGAAGCTGGTCAGTTAAGAAGACTGTAGAACTGTCATAAAGTCAATAAAGTCAATTTTTGGTGAAATGTCTGATGTAAGCTCTGAGTTTAGATGCTGCATGGTTGGTATCATGCAGCATCTAAATCTCAATATGAAATAGATTCTGCAGTGAcgatatatttttgtttagcatTACCCTTGGAACCCAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12698 lncRNA upstream 15643 1415326 ~ 1425295 (+) True G8469
TU12699 lncRNA upstream 24474 1407651 ~ 1416464 (+) False G8469
TU12694 lncRNA upstream 32228 1406988 ~ 1408710 (+) False ccdc39
TU12674 lncRNA upstream 54952 1383892 ~ 1385986 (+) True G8449
TU12676 lncRNA upstream 58615 1382119 ~ 1382323 (+) True G8451
TU12760 lncRNA downstream 151147 1599046 ~ 1673755 (+) True G8508
TU12775 lncRNA downstream 184417 1632316 ~ 1636622 (+) False G8519
TU12776 lncRNA downstream 184417 1632316 ~ 1636622 (+) True G8519
TU12857 lncRNA downstream 233528 1681427 ~ 1683093 (+) True G8556
TU12881 lncRNA downstream 457467 1905366 ~ 1910679 (+) True LOC122360854
XM_043254436.1 mRNA upstream 32217 1397524 ~ 1408721 (+) True ccdc39
XM_043255821.1 mRNA upstream 44760 1390712 ~ 1396178 (+) False dcun1d1
XM_043255827.1 mRNA upstream 44760 1390834 ~ 1396178 (+) True dcun1d1
XM_043255802.1 mRNA upstream 59468 1375058 ~ 1381470 (+) False b3gnt5b
XM_043253906.1 mRNA downstream 21161 1469060 ~ 1472849 (+) True asip2b
XM_043219688.1 mRNA downstream 69798 1517697 ~ 1525574 (+) True zgc:153115
XM_043219696.1 mRNA downstream 69846 1517745 ~ 1525574 (+) False zgc:153115
XM_043255304.1 mRNA downstream 96874 1544773 ~ 1559774 (+) True rc3h1b
XM_043255360.1 mRNA downstream 96874 1544773 ~ 1559774 (+) False rc3h1b
TU12491 other upstream 612729 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 990919 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 990919 447162 ~ 450019 (+) False LOC122360757
TU12236 other upstream 1217895 214409 ~ 223043 (+) False G8167
XR_006252350.1 other downstream 96874 1544773 ~ 1554114 (+) False rc3h1b
XR_006252584.1 other downstream 730867 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 730867 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 822782 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 951055 2398954 ~ 2401745 (+) True G8725

Expression Profile