RNA id: XM_043261780.1


Basic Information

Item Value
RNA id XM_043261780.1
length 2907
RNA type mRNA
GC content 0.55
exon number 22
gene id LOC122360938
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2495943 ~ 2510010 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAACAGGACTGAAAAAGCGTACCCGAAAGGCCTTCGGGATACGGAAGAAAGAAAAGGACAGTGACTCCACTGGATCCCCAGACAAAGAAAAATCTAAAAAAGCCAATGGTGCACCGAATGGTTTCTACGGTGAGATCGACTGGGATCGTTATAACTCTCCTGATGTTGACGATGAGGGTTACAGCGTTAAACCCGGAGAACAAGGAGGAACAGCTCCAAAAGTCAAGACGTTCTTCTCCTCCAGTGAGTCggagggagaggaggagcaCGGAAAGAAATTTAAGATCAAGATCAAACCTTTGACAGCAAACAGTGGAAACTGTACAGTGTCTACTATGGATGAGCTGAAGGCCTCAGTGGGGACGCTGGCCATCTCTCCTTCTCCTCTGGTTAGTCTCGCTAGAAAGAGTCCGTGCCCGATGAAGCGAAACCTGTCAAATGAGGAGATCGCCAGACCACGACGATCTACTCCAACACCCACGACAACTCCAGGACCTGGTTCGGACCCGCCCAGagaaaacacaacagCGTTCTTCGGCCCACCGTTTGAGACCAATTTCGAAGCACACAACTCAGAAGTGTTCCCGGTTGAGCCGGAGCTCTGGTGTCAGTCCACTTCTCTCTCCACCTGTGTTCTCAGCAGATCTCTGCCCACTGGAGCTCCGCCTCCACTTCCTCCAAAGAACATTCCTGTGACCCCACCTGGACGCAGTTCTAGCTCTGTAGAGTCCTCCGgTTATTATAGTGTGGTTCCTAGCATCAGAGGAGAGGGATCAGCTTCGGCCTGTCAGGACGCCCCATTATCTGACCCATCCGGAGGGGCGTCTATGCCTGACTTGGACAGTGTTTTTGGGCCTGTGGAGACGCCCAGGTCTGCATCAGATGTGGTGCAGTGCAGCTGGGTGAGCTTCAGCGAAGGCTCTCCCGCCAGACCCCCTCCCCCAGACGAACCCGCCCCTTCTCCGCCTCTGTCTTCTTCCCCCACGGACTCGCCCCCAACCTCGCCCCTCAACCTGCCGCCTCCCGCCTCCCCGCCTCCCCCCCTCCACTCCATCCCGCCTCCAGATTcacctccaccacctccacccTCGGACTCTCCTCTGAATTcacctccaccacctccacccTCGGACTCTCCTCTGAGTCCTCCAGACCTCCCCTGCTGCTTTCAGCTCCCGGAGTCCGAGCTCACCCAAGAGTCCCCAATGACCCCCGCCAGCCCCGGACTGCCCTTCCCGCCAGCAGACCACCATCCTCATGGAGCCATACCTTCCCCTCTTACCTTGAGAGACGACAGCAGGAGAACCCCTGACCTGGTGGGCATGAGGGATGAGATTTCTGTGTTTGGCACATCACCCAAAGACCTCGCAGCAGGAAGCTTCAGAGGAACCCCACCTCCTCTGCCACCTCCTACTTACAGGAGTGTGGTGGGCTCCCCGGGGCCCGGCAGTGGGCCGTCGTCTCCCGCACGTGCCGGCACTCCGCTGTCCGCTGGGAGTCCGATCCCACCTCTACCACCAAGACCATCGTCACGACCTAAACTACCACCTGGAAAACCAAACCTAGCAGATCTGGCCCGACCCTTCAGCCCCCCCATCCACTCGTGGAGTCCTCCACCCTTTGCTCCTCTGGCCAGAGCCGAAAGCAcctcctccatctcctccgtCACCTCTCTGAGCGCAGCCTCCACACCTACACTAGGCCGAGAGCTCAACCTCTCTGTGTCAGTATGCTCCAGAGGTCCGAGTCCTCTCACAATGGGTCCCCAGGACACTCTACCGGTGGCAGCCGCCTTCACAGAGACCATCAGCGCTTACTTTAAAGGAGCAGATCCCACTAAGTGTTTGGTGAAGATCGCCGGTGAGATGGTGTTGTCTTTCCCAGCAGGGATCACCAGACACTTCTCCACCCATCCCAGTCCACCGGTGCTGACCTTCACCATCAGTCAGTACAGTCGACTGGAGCAGGTCCTTCCCAACCCACAGCTTCTGTGCTGCGACACCACGCCACCTACAGGTGATTCAAAGGAGTTCTGGGTCAACATGTCAAACCTGTTGAGTCACCTGAAGAAGGTGGCTGAGCAGAGGCCACAGGCCACGTACTACAACGTAGACATGCTGAAGTACCAGGTGTCCACTCGAGGCATCCAGTCCACTCCGCTGAACCTGGCGGTGAGCTGGCGGGGTGATGCCTGCAGCACAGACCTCAGGATAGACTATAAATACAACACGGAGGCCATGCCCATACCCACACCGCTCACCAACATCCACTTCATGGCAGCTGTGGACGGCGGCGTGAACAAACTGCAGGCTATGCTCCCACTTGCCCACTGGAACCCGGAGGAGCAGAACATAATGTGGAAGATCCCAGAGCTCTCACAGAGGTCTGAAAATGGAGGCGTGGGCGCTCTTCTGGCTCGCTTCCGGTTAGCCGAGGGTCCCAGCAGACCTTCTCAGCTGGCAGTGCAGTTCACCAGTGAGGGCAGCACTCTGTCTGGATGCGATTTTCAACTCGTCGGTTCAGGCTACAGACTCTCTTTGgtcaaaaaaaggttttctgcAGGTAAATATCTGGCAGACAACTGACATGTAGGATGGACTGCGAGTGGGGATGCTCTTTTGGCACTACAAAGActttggaaaaatgtttttattgaaatacagCACTCAAAATCTCACGTATAATGTCTGGTGTAGAATATCATCAGTGCGttctgtgggtgtgtgtatgtgaatatcagtaaatattttgtgtgtgtatatgataaAACTTCAGGACAAATGCAATACGTGGACTTTTTTCGCTGGGTTCTTGCAGAAGGCAGAGTTTCTTTTTTCACTATTGCACATTTTCTCTCTGCCCCAAACCAAACACACCTAGTGACATTACAATCTAATAACACCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13102 lncRNA upstream 50743 2443588 ~ 2445200 (+) True G8737
TU13075 lncRNA upstream 174756 2288286 ~ 2321187 (+) True G8716
TU13076 lncRNA upstream 205903 2288825 ~ 2290040 (+) True G8717
TU13062 lncRNA upstream 207727 2287346 ~ 2288216 (+) False sgip1b
TU13050 lncRNA upstream 242352 2249222 ~ 2253591 (+) True G8703
TU13085 lncRNA downstream 1612 2511622 ~ 2609519 (+) True G8724
TU13145 lncRNA downstream 102512 2612522 ~ 2613104 (+) True G8764
XR_006252229.1 lncRNA downstream 107197 2617207 ~ 2618878 (+) False LOC122355548
TU13126 lncRNA downstream 107258 2617268 ~ 2669597 (+) True LOC122355548
TU13127 lncRNA downstream 107258 2617268 ~ 2619357 (+) False LOC122355548
XM_043261741.1 mRNA upstream 34721 2453850 ~ 2461222 (+) True LOC122360901
XM_043258550.1 mRNA upstream 64486 2427557 ~ 2431457 (+) True LOC122358704
XM_043258526.1 mRNA upstream 75988 2406742 ~ 2419955 (+) False LOC122358652
XM_043258523.1 mRNA upstream 75988 2411169 ~ 2419955 (+) True LOC122358652
XM_043258628.1 mRNA upstream 104491 2390878 ~ 2391452 (+) True LOC122358767
XM_043254791.1 mRNA downstream 31905 2541915 ~ 2544563 (+) True imp3
XM_043254814.1 mRNA downstream 38056 2548066 ~ 2554174 (+) False zgc:55943
XM_043254822.1 mRNA downstream 40276 2550286 ~ 2554174 (+) False zgc:55943
XM_043254691.1 mRNA downstream 53167 2563177 ~ 2581265 (+) True abi1b
XM_043254714.1 mRNA downstream 53167 2563177 ~ 2581265 (+) False abi1b
XR_006252635.1 other upstream 75988 2411165 ~ 2419955 (+) False LOC122358652
TU13086 other upstream 94198 2398954 ~ 2401745 (+) True G8725
TU13065 other upstream 220808 2270681 ~ 2275135 (+) False sgip1b
XR_006252584.1 other upstream 306578 2178766 ~ 2189365 (+) True LOC122358138
TU13121 other downstream 38103 2548113 ~ 2555321 (+) False zgc:55943
TU13123 other downstream 39882 2549892 ~ 2555321 (+) False zgc:55943
TU13124 other downstream 39882 2549892 ~ 2555321 (+) True zgc:55943
TU13140 other downstream 81624 2591634 ~ 2592758 (+) True G8760
TU13128 other downstream 107258 2617268 ~ 2669943 (+) False LOC122355548

Expression Profile