RNA id: XM_043262111.1


Basic Information

Item Value
RNA id XM_043262111.1
length 2238
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC122361145
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1591993 ~ 1598263 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAACACCACTCGCGATTCGCGGTGACAGGAAGTCCTGCTTCGCTTTACCCCCGCGAAAACagtttctgttaaataataagcGGTTGTAGCATTGCGTTATGGTTGATTCTGTGTTACAGACTGCTGTTGTGTGCTCGCTGAGCTGATCGTCCACATCGCGGGGTTCCAGGATGTTGATATGTAGTGAGAGATCTCCCTCGTGTATCATCTCTGTGAGAGTCTTGGGCGAACATGGCGGCGGTGACACCAGTTCGATGTTCTCTGAGAATCCTGAGACGTCTGCCCCGGGTTGTATCCCATCGCCTCCAGCAGTGGCCCAGGCTCCAGGCTCTTGGACCGGCCCCTGTGTTTCACATCTCCACTCCCCTCACTTcagtccactggagaggcttcAGATGCAGCCAGGTGGCCTCTGGACAGGTGCTGCAGTTTAAACTCTCGGACATTGGAGAGGGCATAATGGAAGTGACGGTGAAAGAGTGGTATGTGAAGGAAGGGGACAGAGTCTCTCAGTTTGACAGCATTTGTGAAGTCCAGAGCGACAAAGCGTCCGTCACCATCACGAGCCGCTACGACGGCATCATCCGTAAGCTGTATTACGACGTAGATGCCATCGCACATGTTGGTACGCCTCTTGTGGACATCGAAACGGACAAAGCCCTGGAGGGCGCCCCAGAGGAAGACGTGGTGGAGACTCCGGCAGTATCCCATCAGCAATCGCATCAGGAAATCAAGGGCCAGAAAACCCAGGCGACACCAGCGGTGCGCCGTCTGGCCATGGAGAACAATATTAAACTGAGCGAGGTGGTCGGGACGGGAAAAGACGGACGTATTTTGAAAGAGGATATTATCAATTTCTTAGCCAAGCAGACTGGAGCTATCCTCCCGTATGAAGTCCAGAAAAGCCCATCACCCGCTGCAGACACCCCACCCAAAGAAAAGACGCCCGTCATGGCTCCTCCGGCGACCCCGAGACCCGTCTTCACTGGGAAAGACAGAGCAGAGCCTCTGAACGGTTTCCAGAAGGCCATGGTGAAGACCATGACTGCTGCTCTGAAGATTCCTCACTTCGGTTACTGTGACGAGGTGGACCTGACGCAGCTGGTGCGGTTACGCTCAGAGCTGAAGGAGCTGGCGGAGTCTCGAGGTGTCAAGCTCAGCTACATGCCTTTCTTCATCAAGGCCGCGTCCCTGGGGCTCTTGCAGTTTCCTGTTCTCAATGCCTCTGTGGATGAAGGCTGTCAGAACATCACATTCAAGGCATCTCATAACATCGGGCTGGCGATGGACACTCCTCAGGGCCTCCTGGTGCCCAATGTGAAGAGCGTACAGGCCCTCAGTGTTTTTGACATTGCTGTGGAGCTCAACCGTCTGCAGCTTCTGGGTTCATCCGGACAATTGGGCACCTCTGACCTCACCGGAGGAACCTTCACCCTCTCCAACATCGGCTCGatTGGAGGGACGTATGCCAAGCCGGTGATTCTGCCCCCGGAGGTGGCCATCGGAGCTTTGGGAAAGATCCAGGTGCTGCCCAGGTTTAACTCCTGTGACGAGGTAGTGAAGGCACACATCATGAATGTCAGCTGGTCTGCCGATCATCGCATCATTGACGGCGCCACCATGGCCCGCTTCTCAAACCTGTGGCGCTCTTACCTGGAGAACCCAGCTTCCATGGTCCTGGATCTCAAATGAACACTTCCCTGGAAATCAAATCCCTCTGTCCGTCACTTCCTGCAGTGTCTTTACGTGTCGTGCCTATCATGTGAACACTCGAGCATCTGCTTTCACGTTCATCTTTGTTTCTCAAACAACTTTAAATTCCTTCTCTCGTTGCCTTAATTAAAAGCGGTTACGGTAACTTTGCATTGCAAAACACTCACCGTATGCTTTTGGAAATGCTGTTATGTAGCAGGGTtgaacatttcaaattttcattGTCTTGCTGTACACCAAGTCTGAAGTCTCAAATCACCCATAGGTTTTTCTGATGCCTTGTGTACGGAGGACGGAGGCTGATACTGACTGAATCTGTACCGTAGCGTCTCATTGTCTGCTGACTTTCTCTGAGACTTCATTCACACAAGCCTCTGTTGAGCTGACAGACAGCCACTTCATCTAAAACCACTTGCGTGCCAGCAATTGTGAAGAAAGGACCACCATTTAACTGTTAAAAGAACAAATGGACCACACATGTATAGATTATTAAATTTTGAgtagaataaatgttttatggcaA

Function

GO:

id name namespace
GO:0009081 branched-chain amino acid metabolic process biological_process
GO:0046949 fatty-acyl-CoA biosynthetic process biological_process
GO:0048037 obsolete cofactor binding molecular_function
GO:0043754 dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity molecular_function

KEGG:

id description
K09699 DBT, bkdB; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12698 lncRNA upstream 166698 1415326 ~ 1425295 (+) True G8469
TU12699 lncRNA upstream 175529 1407651 ~ 1416464 (+) False G8469
TU12694 lncRNA upstream 183283 1406988 ~ 1408710 (+) False ccdc39
TU12674 lncRNA upstream 206007 1383892 ~ 1385986 (+) True G8449
TU12676 lncRNA upstream 209670 1382119 ~ 1382323 (+) True G8451
TU12760 lncRNA downstream 783 1599046 ~ 1673755 (+) True G8508
TU12775 lncRNA downstream 34053 1632316 ~ 1636622 (+) False G8519
TU12776 lncRNA downstream 34053 1632316 ~ 1636622 (+) True G8519
TU12857 lncRNA downstream 83164 1681427 ~ 1683093 (+) True G8556
TU12881 lncRNA downstream 307103 1905366 ~ 1910679 (+) True LOC122360854
XM_043255388.1 mRNA upstream 23451 1563005 ~ 1568542 (+) True extl2
XM_043255374.1 mRNA upstream 32219 1544773 ~ 1559774 (+) False rc3h1b
XM_043224318.1 mRNA downstream 249823 1848086 ~ 1855235 (+) False rgs18
XM_043224326.1 mRNA downstream 250781 1849044 ~ 1855235 (+) True rgs18
XM_043218894.1 mRNA downstream 266242 1864505 ~ 1867191 (+) True rgs1
XM_043218902.1 mRNA downstream 266244 1864507 ~ 1867191 (+) False rgs1
XM_043221825.1 mRNA downstream 275759 1874022 ~ 1876886 (+) True rgs13
XR_006252350.1 other upstream 37879 1544773 ~ 1554114 (+) False rc3h1b
TU12491 other upstream 763784 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 1141974 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 1141974 447162 ~ 450019 (+) False LOC122360757
TU12245 other upstream 1368950 222045 ~ 223043 (+) False G8167
XR_006252584.1 other downstream 580503 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 580503 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 672418 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 800691 2398954 ~ 2401745 (+) True G8725
XR_006252635.1 other downstream 812902 2411165 ~ 2419955 (+) False LOC122358652

Expression Profile