RNA id: XM_043262112.1


Basic Information

Item Value
RNA id XM_043262112.1
length 1419
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC122361161
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 5836648 ~ 5838633 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGATTCTTTTTGGAAGGGAGTTCCTTGTACCTCCATCCCCTGGCTCACCCGATAGTCCCATTCCTCCTGATGACTACTTTGAGGGTTCTGCTGCACGTAATGACTACATACCTATATATGCCTATGATAATTATCCCATAGGAAAAGCAGCCAATCCAATGGCCAGAGGAGGCCCACTGATGCCATATAACGATGAATTAAAAGGATACCCTTTACCCATGTTTCCAGTCTTGCCTGACCTATATCCCATTCTACTGAAACCTCTGTCCGGAAACACGACTCAAGGATCTCGCACAGTGCCTACTGGACAACAACCAGACCTTTCATACTGTAACGTGCTCCTTGAGGCACCAGTGCCTCCACCCATGGATCAAATGCCCTGGTTCTGTGTTTGCTTACAATGTAAAGGGGGTCCTAATAGTTCAAAGGGGAACAAAGGAGATCTGGGATTGCCAGGTCAAATAGGTGATATTGGTGAAAAAGGACATCTGGGCGCATTTGGCTTAAAAGGACTCAAAGGAGAACAAGGCCCCAAAGGTGATAAAGGGGACAGGGGTTTGGATGGAAATCAAGGACAGCAGGGTTTACCCGGTGAGACAGGACAGTgtccagtaatttgttactcaATCAAGGGATCCCAAGGAGAACTTGGTCATCCTGGCATGGCAGGGGGAAGAGGAGTTACAGGGTTGAGAGGAAGTCATGGATCGAAGGGCCAGAAAGGAGATTTGGGGGATGATGGTCCACAAGGAGCTCCAGGTTTAAATGGCCAGAAAGGAGACCAGGGTGAAAGAGGGGAGTGTCACTGCAGTGATGGAAGAGACGGTGCAAATGGAATTATCGGGATTTCAGGACTAAAAGGTAGCAATGGGGAGACTGGCCATCAAGGTGCAATAGggttaaatggagaaaaagggCAAAAGGGGGATCTTGGGGTAATGGGAGCTCCTGGTCCTTGCTCTTCAGCAATTCAATCCATTTTTTTAGCTGCACTAAGCAGCAAATACCCACAACCAGATTTGCCAGTTCCTTTCACTGATGTGTTTTCCAACAGAGGATTTAACTTTGACTCCATTAGAGGAGTCTACCGGGCTCCTCTCAGTGGTACCTATGTCATCAGCTACAACTTAGTTGGTTTCAACAAACTGCTCAAAGTGGGGCTCTTCCACAACTTCAGACCAGTCATCAAAAATACAGGGCCAGTAGTTCTTGCAATTTCTCAACAGGTTGTCCTGCATCTTATCATGGGGGATGAAGTTTGGCTACAAGTGAAAGACGTTGATTCCAATGGTATGTATTTTAACAGTGAGAGCAGCAGTACCTTCTCAGGCTTCCTGCTCTATCCAGATAGCTGTGATATGCCAACGTCAGGTGATTTTCAATATCCTATAAGTGGAACATACTCCTGGGGTTACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14470 lncRNA upstream 3958 5832357 ~ 5832690 (+) True G9690
TU14425 lncRNA upstream 5533 5770058 ~ 5831115 (+) True G9667
TU14431 lncRNA upstream 111632 5724701 ~ 5725016 (+) True G9671
TU14420 lncRNA upstream 119242 5717178 ~ 5717406 (+) True G9663
TU14416 lncRNA upstream 130763 5702617 ~ 5705885 (+) True G9660
TU14472 lncRNA downstream 13636 5852269 ~ 5859952 (+) True G9692
TU14477 lncRNA downstream 303409 6142042 ~ 6142865 (+) True G9697
TU14570 lncRNA downstream 537510 6376143 ~ 6376597 (+) True G9758
TU14665 lncRNA downstream 663757 6502390 ~ 6502594 (+) True G9825
TU14667 lncRNA downstream 673531 6512164 ~ 6512394 (+) True G9827
XM_043223481.1 mRNA upstream 10398 5824152 ~ 5826250 (+) False dusp28
XM_043223488.1 mRNA upstream 10398 5824154 ~ 5826250 (+) False dusp28
XM_043223496.1 mRNA upstream 10398 5824154 ~ 5826250 (+) False dusp28
XM_043223472.1 mRNA upstream 10398 5824155 ~ 5826250 (+) True dusp28
XM_043223461.1 mRNA upstream 10398 5824155 ~ 5826250 (+) False dusp28
XM_043219558.1 mRNA downstream 397237 6235870 ~ 6239694 (+) True crfb16
XM_043255183.1 mRNA downstream 410415 6249048 ~ 6255573 (+) True mb21d2
XM_043217069.1 mRNA downstream 418918 6257551 ~ 6337572 (+) False fgf12a
XM_043217065.1 mRNA downstream 437383 6276016 ~ 6337572 (+) False fgf12a
XM_043217047.1 mRNA downstream 447289 6285922 ~ 6337572 (+) True fgf12a
TU14467 other upstream 10362 5823993 ~ 5826286 (+) False dusp28
TU14373 other upstream 227372 5608327 ~ 5609276 (+) True G9630
TU14284 other upstream 926850 4909129 ~ 4909798 (+) False LOC122355892
TU14282 other upstream 926850 4909136 ~ 4909798 (+) False LOC122355892
TU14280 other upstream 937362 4898398 ~ 4899286 (+) False LOC122361055
unassigned_transcript_185 other downstream 131017 5969650 ~ 5969724 (+) True trnag-gcc_1
unassigned_transcript_186 other downstream 132886 5971519 ~ 5971593 (+) True trnag-gcc_2
unassigned_transcript_187 other downstream 136082 5974715 ~ 5974786 (+) True trnag-gcc_3
unassigned_transcript_188 other downstream 139282 5977915 ~ 5977989 (+) True trnag-gcc_4
unassigned_transcript_189 other downstream 142530 5981163 ~ 5981233 (+) True trnag-gcc_5