RNA id: XM_043264309.1


Basic Information

Item Value
RNA id XM_043264309.1
length 2299
RNA type mRNA
GC content 0.46
exon number 16
gene id usp14
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3658015 ~ 3664392 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCACGGTAGTCGCTCGCCGAGCTCGTCGATCCAGTCATCATGCAGTTGCAGCGTCATTGTGGGCTGCTGTTTGAATGAAGTTAGAAGACACTCAAATCTTCCGCACCCCGACTTAAACCCGGCTTTCGGAGTTGAGCTGAATAAAGGACAAGTGAACGGAAAGATGCCCGTGTTTACAGTGAATGTGAAATGGGGGAAGGAGAAGTTTGACGCGGTCGAGCTGAATACGGAGGAGCCGCCCATGGTGTTCAAAGCCCAGCTTTTTGCTCTAACGGGGGTTCAGCCGGAGAGACAGAAAGTCATGGTGAAAGGAGGAACGCTGAAGGATGACGAATGGGGCAACATCAAGTTGAAAAACGGGATGACTCTTCTGATGATGGGCTCTGCTGACGCCCTGCCCGAGGAGCCTGTAGTGCGACCCATGTTCGTGGAGGACATGACGGAGGAGCAGCTTGCGTCAGCGATGGAGTTGCCGTGTGGATTGACAAATCTGGGCAACACGTGTTACATGAATGCAACGGTGCAGTGTCTACGCTCTGTGCCCGAGCTCAAAGACTCTCTCAGGAGGTACTCCGGTGCCTTGCGGTCTTCTGGAGCTAATGCACCTTCCCAGTACATCACAGCAGCTCTGCGCGATTTGTACGAGTCCATGGATAAGACCGCCTCAAGCATTCCACCCATCATCCTGCTGCAGTTCCTGCACATGGCCTTCCCACAGTTCGCCGAAAAAGGAGACCAGGGCCAGTATCTCCAGCAGgaTGCCAATGAGTGCTGGGTTCAGATGATGCGGGTCCTTCAGCAGAAATTAGAACCTCAAGAATCAGAAACCCCACTGGAGACTGACAGCGACAGTGGAGCTGCTGCTGCctcaaaaaagaagaatttcATCGATCAGTATTTTGGTGTTGAATTTGAAACGACTATGAAGTGTACCGAGTCAGAGGATGAGGAACCAACTAAAGGCACAGAGAGCCAGCTGCAGCTCAGCTGCTTCATCAATCAGGAAGTCAAATATCTCGCCACCGGACTCCGATTGAGGCTACAGGAGGACATCACAAAGCTGTCTCCATCCTTACAAAGAAATGCGCTCTATATCAAATCGTCCAAAATCAGCCGTCTCCCGGCATACCTCACGGTGCAGATGGTCCGGTTCTTCTACAAAGAAAAAGAGTCAGTGAATGCCAAAGTCCTGAAGGATGTCAAATTTCCTCTTATGCTGGACGTCTATGAGCTGTGCACTGCTGAGCTGCAGGAGAAGATGGTTGCTGTGAGGTCGAAGTTTAAGGAGGTTGAAGACAAGAAGCTGGAGATGCAGCAGCAGCCGAAAGAGAGTCAAAAGGTTGGCGCTCCAAAGGAAACAAAATACgaacctttctgtttttctgaagATTTGGGCTCCAACAACAGCGGTTACTACGACCTGCAAGCGGTTCTGACGCATCAGGGGCGATCCAGTTCATCTGGACACTACGTCGCCTGGGTTAAAAGGAAAGAAGATGAATGGGTGAAATTCGACGACGATAAGGTCAGCATCGTGACCCCTGAGGACATCTTGAAGCTGTCTGGTGGTGGCGATTGGCATATAGCATACGTGCTTCTGTACGGCCCTCGACGTCTGGAGATACTGGAGTAACTGGTTCAGAGGGAACTTAAACCATAATTGCCATTTCAGAGCACTGTCTGTATAGATGTGCAAATAAATTTTggtgtctttaaaaaaacatgaccttAATATTTCCTGAACTCTTCATGCATCAACACACAAGTGGCATGTTtaagggtgttttttttctttttccttttttggatGATTGATTGCTGGACGTGATCCTTGTTTGGATTTGGAGCAAtggttttataaatgttttctatatgcattgatttgttttttttaagcctgTGAAAAGGTGTTCATGTTCAATAGACGGTATCCTCCTGTGAGAGAAGTAGTGACTTGGTATATAAAGATGTTCTTGGCCACAAGTTTCAGACTTAAATACATCAAGAACCGTTGTATGATACTGGGATCTCACCAAAAGAAATGCAGTTTGTTTATAAggatatgttgtgtgtgtgtgtggattgaAACTTAGAGGTGGATTTCATATCAAAGCACTTTGAGAGGATGTCTTTATGCTCAATTACTGCTTCTGTCTTTAGCTACCATGCAACAAATGCCACTGTAAACTCATCTGTCCTTAAATACTCAAATACAAAGTGAGAGAACTTGAGCTCTGTAATAAGTTATTGACTACTGGCTTTTCATAAAAGGTGAAATAAACATGCCATTAACAGCTAA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K11843 USP14, UBP6; ubiquitin carboxyl-terminal hydrolase 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13693 lncRNA upstream 84940 3572437 ~ 3573075 (+) True G9142
TU13692 lncRNA upstream 93776 3563708 ~ 3564239 (+) True G9141
TU13665 lncRNA upstream 133444 3523270 ~ 3524571 (+) True G9130
TU13515 lncRNA upstream 493192 3156600 ~ 3164823 (+) False gpr158b
TU13511 lncRNA upstream 536962 3116848 ~ 3121053 (+) True G9022
TU13801 lncRNA downstream 116148 3780540 ~ 3780778 (+) True G9232
TU13803 lncRNA downstream 119947 3784339 ~ 3784667 (+) True G9234
TU13804 lncRNA downstream 120525 3784917 ~ 3785295 (+) True G9235
TU13796 lncRNA downstream 122608 3787000 ~ 3790339 (+) False LOC122355245
TU13810 lncRNA downstream 221690 3886082 ~ 3916483 (+) True G9241
XM_043264326.1 mRNA upstream 67883 3585341 ~ 3590132 (+) True LOC122362766
XM_043264332.1 mRNA upstream 67883 3585341 ~ 3590132 (+) False LOC122362766
XM_043261096.1 mRNA upstream 73975 3575656 ~ 3584040 (+) True serbp1b
XM_043253654.1 mRNA upstream 95145 3550235 ~ 3562870 (+) True zyg11l
XM_043253319.1 mRNA downstream 91779 3756171 ~ 3789633 (+) False LOC122355245
XM_043253327.1 mRNA downstream 91779 3756171 ~ 3789633 (+) False LOC122355245
XM_043253336.1 mRNA downstream 91779 3756171 ~ 3789633 (+) True LOC122355245
XM_043254140.1 mRNA downstream 148921 3813313 ~ 3875726 (+) True pth1r
XM_043258723.1 mRNA downstream 286891 3951283 ~ 3991543 (+) True slc22a23
TU13709 other upstream 40972 3615482 ~ 3617043 (+) True G9154
XR_006252450.1 other upstream 918108 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 968388 2675370 ~ 2689627 (+) False LOC122356587
TU13150 other upstream 1021429 2635241 ~ 2636586 (+) False G8768
TU13151 other upstream 1021429 2635241 ~ 2636586 (+) True G8768
TU13731 other downstream 12033 3676425 ~ 3678934 (+) True G9173
TU14011 other downstream 557847 4222239 ~ 4223112 (+) True G9361
TU14081 other downstream 899505 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 914882 4579274 ~ 4588478 (+) True mylk4a
TU14280 other downstream 1234006 4898398 ~ 4899286 (+) False LOC122361055

Expression Profile