RNA id: XR_006247819.1


Basic Information

Item Value
RNA id XR_006247819.1
length 325
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC122328698
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 643034 ~ 644926 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGATATTTTGTGCCCTTTTCTAATACTGACTTTCTCAGTGACGATGCTGCAATTTCAGGTCTGCAgaagaaaacattcattaaaggGCAGCTACTCGGTTCCTCTGAAGCAGCCTGGGATGCCATGTCTCCAAAATTGAGGTGTGGTGACGATCTCATAAATTTACAACTCAGTGGTCCAGAGGTAGAAAATGTTGAGCTTTGTCGAGGTAATGGGGTGGCTGTTCTTCTCACTCATTTGCCACCTCACTGTGGACACGCCGCACCCACTTATACAGGTCTCGTTTATGCTACTCCCTATGATGGATGTGGTGTTACGCAAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247267.1 lncRNA upstream 8268 634151 ~ 634766 (+) True LOC122325219
TU12212 lncRNA upstream 20426 151098 ~ 622608 (+) True LOC122325212
TU12185 lncRNA upstream 39089 571029 ~ 603945 (+) False G8151
TU12188 lncRNA upstream 39089 571029 ~ 603945 (+) True G8151
TU12316 lncRNA upstream 58686 583362 ~ 584348 (+) True G8213
TU12262 lncRNA downstream 23378 668304 ~ 671563 (+) True G8173
TU12329 lncRNA downstream 35761 680687 ~ 684193 (+) False G8222
TU12330 lncRNA downstream 35761 680687 ~ 782745 (+) True G8222
TU12606 lncRNA downstream 535204 1180130 ~ 1186032 (+) True G8394
TU12596 lncRNA downstream 552501 1197427 ~ 1203014 (+) True G8393
XM_043220072.1 mRNA upstream 33867 605086 ~ 609167 (+) True LOC122325155
XM_043220006.1 mRNA upstream 78044 559979 ~ 564990 (+) True LOC122325106
XM_043219998.1 mRNA upstream 78044 560220 ~ 564990 (+) False LOC122325106
XM_043261606.1 mRNA upstream 185289 447250 ~ 457745 (+) True LOC122360757
XM_043219987.1 mRNA upstream 398312 241451 ~ 244722 (+) True LOC122325097
XM_043254654.1 mRNA downstream 4058 648984 ~ 654781 (+) True zgc:153615
XM_043222082.1 mRNA downstream 13831 658757 ~ 662000 (+) True zmp:0000001127
XM_043222089.1 mRNA downstream 13831 658757 ~ 662000 (+) False zmp:0000001127
XM_043254375.1 mRNA downstream 18865 663791 ~ 667351 (+) True txndc12
XM_043254347.1 mRNA downstream 40297 685223 ~ 692838 (+) True slc25a24l
TU12282 other upstream 193015 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 193015 447162 ~ 450019 (+) False LOC122360757
TU12228 other upstream 419991 214409 ~ 223043 (+) False G8167
TU12491 other downstream 155006 799932 ~ 828209 (+) False st6galnac5a
XR_006252350.1 other downstream 899847 1544773 ~ 1554114 (+) False rc3h1b
XR_006252584.1 other downstream 1533840 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 1533840 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 1625755 2270681 ~ 2275135 (+) False sgip1b