RNA id: XR_006247864.1



Basic Information


Item Value
RNA id XR_006247864.1
length 179
RNA type snoRNA
GC content 0.43
exon number 1
gene id LOC122328955
representative True

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1384697 ~ 1384875 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTCTTCTGCTCAAAAGAACTCTGCTAAAATTGCAGATTCTAGGTTCTCCTGGTTTATGCAATAATGCTAGCAGAGTATCATGTGGAAGAAGAGCAGTAGCCCTGCACCGGAAATGAAACGGAGTCGGACCTCTTTCTTAATGTCCAGTGGCTTATGTTTCAAGGTCTAGAgcaacattt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU12669 lncRNA downstream 47312 1335923 ~ 1337385 (-) False mfsd8l2
TU12668 lncRNA downstream 51593 1332845 ~ 1333104 (-) True G8443
TU12664 lncRNA downstream 74406 1309945 ~ 1310291 (-) True G8439
TU12635 lncRNA downstream 136107 1248176 ~ 1248590 (-) True G8415
TU12579 lncRNA downstream 337790 1046590 ~ 1046907 (-) True G8386
TU12713 lncRNA upstream 14533 1399408 ~ 1399728 (-) True G8479
TU12723 lncRNA upstream 77185 1462060 ~ 1462514 (-) True G8489
TU12804 lncRNA upstream 142316 1527191 ~ 1528417 (-) False colgalt2a
TU12914 lncRNA upstream 455297 1840172 ~ 1876938 (-) False G8599
TU12917 lncRNA upstream 488984 1873859 ~ 1876938 (-) True G8599
XM_043255836.1 mRNA downstream 36930 1345142 ~ 1347767 (-) True kcnmb2
XM_043220642.1 mRNA downstream 46699 1331430 ~ 1337998 (-) True mfsd8l2
XM_043256922.1 mRNA downstream 111542 1264644 ~ 1273155 (-) True pcolce2a
XM_043218097.1 mRNA downstream 137435 1245074 ~ 1247262 (-) True chst2a
XM_043217154.1 mRNA downstream 184123 1181277 ~ 1200574 (-) False dipk2aa
XM_043254448.1 mRNA upstream 23994 1408869 ~ 1413253 (-) True wu:fc46h12
XM_043217775.1 mRNA upstream 30470 1415345 ~ 1425295 (-) True LOC122323714
XM_043261410.1 mRNA upstream 43001 1427876 ~ 1440763 (-) True ripk2
XM_043261685.1 mRNA upstream 91373 1476248 ~ 1514995 (-) True LOC122360826
XM_043219676.1 mRNA upstream 140873 1525748 ~ 1532557 (-) True colgalt2a
XR_006247866.1 other downstream 422 1384090 ~ 1384275 (-) True LOC122328960
XR_006247871.1 other downstream 913 1383708 ~ 1383784 (-) True LOC122328985
XR_006246996.1 other downstream 181710 1179945 ~ 1202987 (-) False dipk2aa
TU12372 other downstream 1160763 198628 ~ 223934 (-) False G8237
TU12376 other downstream 1161552 214738 ~ 223145 (-) False G8237
XR_006247870.1 other upstream 222 1385097 ~ 1385166 (-) True LOC122328981
TU13282 other upstream 1054486 2439361 ~ 2441713 (-) False G8880
TU13285 other upstream 1055249 2440124 ~ 2441713 (-) True G8880
TU13346 other upstream 1057309 2442184 ~ 2443319 (-) True G8913
TU13363 other upstream 1091838 2476713 ~ 2502739 (-) True G8921

Expression Profile