RNA id: unassigned_transcript_202


Basic Information

Item Value
RNA id unassigned_transcript_202
length 75
RNA type tRNA
GC content 0.53
exon number 1
gene id trnag-gcc_18
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 6109573 ~ 6109647 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

Gctgtccttggtggttcagtggtagaattctcgcctgccacgcgggagacccgggttcgattcccggccaatgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14472 lncRNA upstream 249621 5852269 ~ 5859952 (+) True G9692
TU14470 lncRNA upstream 276883 5832357 ~ 5832690 (+) True G9690
TU14425 lncRNA upstream 278458 5770058 ~ 5831115 (+) True G9667
TU14431 lncRNA upstream 384557 5724701 ~ 5725016 (+) True G9671
TU14420 lncRNA upstream 392167 5717178 ~ 5717406 (+) True G9663
TU14477 lncRNA downstream 32395 6142042 ~ 6142865 (+) True G9697
TU14570 lncRNA downstream 266496 6376143 ~ 6376597 (+) True G9758
TU14665 lncRNA downstream 392743 6502390 ~ 6502594 (+) True G9825
TU14667 lncRNA downstream 402517 6512164 ~ 6512394 (+) True G9827
TU14674 lncRNA downstream 413158 6522805 ~ 6523467 (+) True G9834
XM_043262112.1 mRNA upstream 270940 5836648 ~ 5838633 (+) True LOC122361161
XM_043223488.1 mRNA upstream 283323 5824154 ~ 5826250 (+) False dusp28
XM_043219558.1 mRNA downstream 126223 6235870 ~ 6239694 (+) True crfb16
XM_043255183.1 mRNA downstream 139401 6249048 ~ 6255573 (+) True mb21d2
XM_043217069.1 mRNA downstream 147904 6257551 ~ 6337572 (+) False fgf12a
XM_043217065.1 mRNA downstream 166369 6276016 ~ 6337572 (+) False fgf12a
XM_043217047.1 mRNA downstream 176275 6285922 ~ 6337572 (+) True fgf12a
unassigned_transcript_201 other upstream 32109 6077390 ~ 6077464 (+) True trnag-gcc_17
unassigned_transcript_200 other upstream 59547 6049952 ~ 6050026 (+) True trnag-gcc_16
unassigned_transcript_199 other upstream 71193 6038306 ~ 6038380 (+) True trnag-gcc_15
unassigned_transcript_198 other upstream 76096 6033403 ~ 6033477 (+) True trnag-gcc_14
unassigned_transcript_197 other upstream 78133 6031366 ~ 6031440 (+) True trnag-gcc_13
unassigned_transcript_203 other downstream 3990 6113637 ~ 6113707 (+) True trnag-gcc_19
unassigned_transcript_204 other downstream 110779 6220426 ~ 6220500 (+) True trnag-gcc_20
unassigned_transcript_205 other downstream 112798 6222445 ~ 6222519 (+) True trnag-gcc_21
TU14569 other downstream 257530 6367177 ~ 6367954 (+) True sst2
TU14734 other downstream 580725 6690372 ~ 6690779 (+) True G9887