RNA id: TU92748


Basic Information

Item Value
RNA id TU92748
length 3102
RNA type TUCP
GC content 0.45
exon number 7
gene id mllt1a
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9954681 ~ 9969485 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCCAGCAAACGACCTTCCAATGCGGAGTCGCCCAAACCTAGTGTCAAGAAGCCAAAGAAGGGGGGTTCAGAGGGGTCAAAAGGCTCCAGCAGTGGGGGGTTCACCGGCACCTCCCCCCGAACAGCGTCTTCCTCCACGGCCTCCTCGGGATACGCCGATAAGAAGGCCTCTAAAGAGAAGGGCCGCTGGGCCAAGGGCAAGTCAGAGACCCAGGAGGTCAAGGAGTCCAAGAAGCCTCCGGAATCCGATGACTCCAACTCTGATGATGAGGCCTCGTCTAAGTCTGAGCAATCAGCACCTTCCAGCCCATCTATTTCCAGCTCCAGCTCAGAGTCCAGCTCCGATTCAGACTTTGAGCCACAGCAGAAACAAGGCCAAGGCCCGCTGCGCTCGATGGTGGCGGATCTCCAGTCGGAGGAGTCTGATGATGACGATAGCAGCTCAGACGAAGAGACGCCAGTCAAGAACAACCTGCCCAGTCGAGACTCCAGGCTGAGTTTAGACAGCGAGAGTGACTGCAGCGACGGGCCGCAGCGTCCCAGTCGAGACCCGCCGCCCCAGCCACCGAAACACAGCACCACCAACAACAAGGTGTCAGGCAGAAAGAGTCCAGATCCTTGTTTACGACAAGAAAAGGTCCTGAAGAAGGGATACGACAAGgcATACACTGAAGAGCTGGTAGACCTTCATCGCAGACTGATGGCGTTAAGAGAGCGAAACGTTCTCCAGCAGATCGTGAACCTCATCGAAGAGACCGGCCACTTTAATGTCACCAACACAACTTTTGACTTTGACCTTTTCTCATTGGATGAGTCAACTGTCCGTAAACTACAGAGCTACCTGGAGGCCACCGCCACATGACAGGAAGTCCACCGAGACTGGGGGAAGGGGGGAGGGCTGCCCTTTTTCACTTCTTTTGTCCTGAGAGAGGGCTGCAAAAGGTGAAAATCTGTTCACAGGAAATGAAAACAGTGGGAAATAATGAAAAGGAGTGAAACGTACAGTATTTTGAGGAGGAAGTGCAGCTATGAATCAACACTACAACACTTCTTCTCTCCTCCTCAATATCCTGTTGGACAGGAAGTTCTCTTCTTAACGGGGCCAGATCTGCTGGAGGGTCATATTTGAATCAAccggaaagaaagaaagaaacaaacaaaaaaaaaaagtctcccTGTAGCCATACGCACTGATGCATCAAGGGTTGcaacctttttatattttatttttgtaccaaTGTTTTTCAAGGTATTTTTGATTGTGGTCGGAAAAAGGAAGCCCCGCACGCCATGAATGTATCGCTTTTTATCCTCTAGGGCTAGTCTTAGTGCCTTTTTCACACCATCTCATTTGTGCTCTTAGGAATTACAGCAGTGTTATCTTTTCACTCCGACTTTAGTCAATCCTTCTATATATGTGGGATCCCTGGATATCGTCCCGGGCAGATTCCAGTTTGTATGCCAATATGTATCAATCCTCATTTATGTGTTCGCCAAACGGGCCTTAGAACTTAAATGTTGTGCATTGCTAGTGCAGCTTGTGAAAGTATTTGGAAATCTGTGTTGatctctgtgttttctgtcatCATATCTGGTTTATTCATTAGACTAAGCGGGAGAGACAAAAGAAAAGGACGAGATGCGCTGTTTTCCTCTCATGTGGCCCCTGAAACAGCAGTCTGTCGATTCACTGTGCTTCTGACtccgactctctctctctctctctctctctgtctcagagCGACTATATCTCGACTTCACTGACTTCACCTCTGTGTCCATTGTTATGCTAATAGCTTTAAGAGGCTCCGTGGCCTGAGCTGCAGACCACATGCCCTTAACTTCACCCCGCGAGAGTCTGGCAGTGTCGTTTGCACAGGTTTTGAATCTCCAGTCGATTCGTCTGAATCTTAgagaacaaaaatgtttgtaacGGTGTACTGATTTAGCATATATGTGCGGctttcagcgagagaatgcttgaGTGTCATGTGCGTGAACTTTTGACTCCCAGTTCTTGGTGTGTGAACTTTAACCTTTGACCGGATACTGGATTCAGGTCAGCCTGTCATAAGGGGGTGGGACACCCAAAGGAGGTGGAGTTTGGTGAACTTGAGTGGCAGCTCTTAAAAGAGTGCGCCCCAGTcgctgttgctgtttttttttttttttttttattatttgagggggttattttttatttatgtacctCTGCACTTTTGGCTTTGTTGACTCAAGTACTTAATTgtctaaattgtatttttaatagttttatacaatatttacatgcaatatGATATTCATTTGTCAATTATTGTGTCAAGAAATGCCagtttttaaggatttttttttcctgtatcaGCACATTATCGTCATAGACTGTAAAGTGACCATCAGAACTTGAAACTGTTACTTCAGGCCAATTTATGAGTTCATGGCAGGGTGTGTTTGTATATCAGAGTTGAATTTCTACAAGTTGACAActagcatttgtttttgtttttttgtagccTCATTATCCACTACAAGGGGATGACTGCAGATTTGCAAAATGAACAAGtatttgttaatgtatttgatttaaacCGTGCTGAAAAGCTAGTCTTAGAGTGGTTGTGGGCACTTGTCACTCagttaaaccagctaagaccaggtggtttaagcttctttttttcagcagaaatGTGGAGAACCTCTGTTTTGTGCATGGGATGCAGCAAAGTAACACTAATGGCGAGGAAATTATTTCAGACAGTCATATTAAACAGATACACATGTATAGTAGACGGCGGGCGTCTTATTTACAGGAGTCTGAGGAAACATGAATCGACGGTTAATACTGCATCATTTTCACATACTTCGCTTGCAGGTTCAGAGAGCTGTCTTTTTGTCAGTCAGTGgtgattttatttgtgtttgtgagcgCGGAAGGACTTGCTGTATTTATCTGTGGGGTTTGGGGAGGTCTGGGTTTTTACGTATGTTCCGATAACGTGATAGAAAACCTTCCGTGATCCGAACAGAAGAGTAACCTTTAGTATGACGTGTTAAACTTGGCATACAATGCCACCATGTGGTCATTTGATGCAAGTTGTAATAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92632 lncRNA downstream 222596 9731906 ~ 9732154 (-) True G62576
TU92619 lncRNA downstream 243754 9710646 ~ 9710996 (-) True G62568
TU92618 lncRNA downstream 245529 9708973 ~ 9709221 (-) True G62567
TU92617 lncRNA downstream 246556 9707773 ~ 9708194 (-) False fam78bb
TU92616 lncRNA downstream 251152 9703376 ~ 9703598 (-) True G62565
TU92749 lncRNA upstream 33866 9995567 ~ 9997484 (-) False adamts10
TU92768 lncRNA upstream 81487 10043188 ~ 10043398 (-) True G62670
TU92889 lncRNA upstream 93350 10055051 ~ 10057928 (-) True G62749
TU92911 lncRNA upstream 115716 10077417 ~ 10077652 (-) True G62768
XR_006251619.1 lncRNA upstream 166184 10127885 ~ 10150991 (-) False LOC122350767
XM_043246908.1 mRNA downstream 21739 9900496 ~ 9933011 (-) False rfx2
XM_043246907.1 mRNA downstream 21739 9900496 ~ 9933011 (-) True rfx2
XM_043246909.1 mRNA downstream 21740 9900496 ~ 9933010 (-) False rfx2
XM_043247781.1 mRNA downstream 98144 9852232 ~ 9856606 (-) True lpxn
XM_043246023.1 mRNA downstream 117300 9786252 ~ 9837450 (-) False trabd2b
XM_043246366.1 mRNA upstream 8427 9970128 ~ 9976762 (-) True acer1
XM_043247334.1 mRNA upstream 17935 9979636 ~ 9995108 (-) True myo1f
XM_043247333.1 mRNA upstream 17935 9979636 ~ 9994898 (-) False myo1f
XM_043247335.1 mRNA upstream 17935 9979636 ~ 9988654 (-) False myo1f
XM_043247916.1 mRNA upstream 33846 9995547 ~ 10041769 (-) True adamts10
XR_006251623.1 other downstream 691924 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1297464 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 1304785 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 1304785 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 1524976 8429694 ~ 8429774 (-) True LOC122351130
TU92747 other upstream 96 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 427482 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 479063 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 578518 10540219 ~ 10540291 (-) True trnar-ccg_26
TU93206 other upstream 1025745 10987446 ~ 10990704 (-) False cep104

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00006158 True 1494 mRNA 0.58 10 CM030142.1 18749834 ~ 18762648 (-)