RNA id: XM_043246661.1


Basic Information

Item Value
RNA id XM_043246661.1
length 2691
RNA type mRNA
GC content 0.38
exon number 8
gene id asgrl1
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 18075597 ~ 18079483 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCTAGTATAACAAGCAGACAAAGAAACagataatgaatgaattacGATAATTCGTTTTGTGATATTTCGCACACACGTGAGACACAAGCGTTACAAAAAGACCAATAGGATATTGGGACTGTCAGTTCCGGCCTCAGAAATGGTTAGGAGCCATTGCGTAAGGACAGAATCACAGAGAACAGCCATCAGGACACTGACCGCAACCGAGGAGAGGAAGCCCACTGAAACAGTCACTTTTAACAACATGGAAACGGTATCATATGACCGGTTTAGCACAATTGAGGCAGAAATTAATCAGGCTggccaaaaatgtatatatcaatcaggtagacagaaaagaaagatgtACATTCTATATGGAGTTCTCATCCTCTATGTGTTTATACTCACTCTGGCTCTAGGAATTAAAATCTCTCAGGTCAGCCGAGATGTCGCCGATCTGAGAGTTTTGCTGAAGTCCTCCGAAACATTTGAAAATGCTCATTTCTCTGAACGTGTGATGGCGGTGCAAGGTCCCTGTCAGGAAGGCTGGGTGTTTTATGAAGACTCATGCtattttcagtcttcagtgaaGAAGAACTGGCAAACTGCTGAGAAAAACTGCGTAGAGAAAGGATCGCATTTAGTGGTTGCCAATAACCTGGCTGAGATTGACTTCCTGTCTTCATTCGTGAAGTTGTCTGATAGCTACTGGATCGGGCTTGTTGAGAAAGAAGAGGGACAGTGGACCTGGGTAGATGGAACGGACTTTAGTGCTACTGAACACCACTGGGACATGGGTCAACCAGATGACTGGGATGTCAGAGTGAACGGTGAAGATTGTGGGCAGCTTCATGCCCGGATAACTGTGGAAGGACGGAGGCTGTGGAATGATGCAGACTGTACCCTTCCTTACCCTTACATCTGTGAGGGCAAACCCAAGAGCCACTGACAAACATCAACTAACTTCCAACATTGCAAAAATCATTTCTTTGGTCcctttttttccagtaaaaatatctgaacatccttaaaacaagatatatttatttgagaaCCAAACTTTAGATGTGTGTATTGAACGAATGTATGAATTGGAAGCTGAATTGATGTTGTtggtggttttttttctttttctaaatttaaaCAGCAGAACATTTTATGCTTAAACAATTCACTAGTGGGGAAAAACAAATATCACTTCATCACTTCAAGGTAATGTGTCTTTCATCTAAAAAACTAATGTGAATGACTGGTTTTCCTGCAGGATTACAACAATTTAagtatgtttaaattaaatactttaagtatgtttgtttaatttattagaaGTTATATTATGATTCTGTTTCAgtaattgcatacattttttttaaaccatgcaCATCTTGTTTTAAGCGCAAACCACCGATtggaagaaaatacattttaaaaatgaaataagatatacattttttaatggtttgttatGTTCCtgccttatgttaaactgctttcaATTACACCATAAtgcaaaagcacaaacacaacTGTCTACTTtgtaaattctttaaaaaaaatgaaataaaatgaaaaaagtacatTGCATAACTATTCATACCCTTAAATTAGCACTTAGCTGAAGCAGCTTTAAAGTCTCAAGTCTTTTTGGTTATGAAGTGACAAGCTTTGCTCTTCTCTCCTCTTCACCTCAcaagctctgtcaggttggattGGGGCAGATGCACATTTTCAAGTTTCTctagaaatatttgattgggttCAGTCCCAGGATCTGGCCGAGCCACTCCAGGACATTGACAGAGTACTTTATAAGCCACTCTTGCTGTGTGCTTAAggtcattgtcttgttggaagGTTAACCTTCTGCCCAGTCTGAGGTTCTAAATGCTCTGGACTGGTTTTTCATTAAAGTTTTTGAAAGGGTTTTCATTATCTCAGTATTTTGGTTCATTGAGCTTTTCTTCGACTCTAACAAGTCCCTCAGTCCTTTCCACTAACAGCTCCACAGCATAAGGCTGCTAACAGCCCAATTTACTTTTCACGTTTCCTTCATATATGATGCTTGGAATTGAGGTTCATCGGACCAGAGAATCTTGTTTCTCCCAGTCTGAGGGTCCTTTAAGTGCTCTTTTTGCACATTCCATGTCTTCGCTGAGCAGAGGATTGACTTTTGCCACAAACTCACTGCCATAAAGCTCAAATCAGTGATGTTTGTTCTTCTGTAGATTTCTCCAAATATGATCATGAAGCTCAACAAAAGTGACCATCAGGTTCTTGGTCACCAGTCTAGACAAAGCCCTTCTCTCTCAATTGCTCAGTTTGGCCAGGAGGCTAGATCTAGGAAGAGTCCtggttgttttaaatatgtgtggCTTAATGCAATCCTGTTTCTGAGCTCTACAGGCAGTTTTTTTACTACCTCAAAACATAACTATTCGATTAAATGTGCCACTCAAAGTGTAGTTGATatgggtatgaatacttttgcaatagaataggttttttttttcaatgtatttgcaaagatgttaaaacagtttttttttctttcacattatGGTGTATGAATTCTATCACAAGAAACTGTATTCTCCGAAGTCTTAGTATCTAACACTACATATATAACTAtgtttactggaaaaaaaagactaataatttttaaaaagtaatactttaattgcatgaataaattaacatataAGATCAAA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96043 lncRNA downstream 42871 18029535 ~ 18032726 (-) True G64942
TU95820 lncRNA downstream 329673 17745685 ~ 17745924 (-) True G64777
TU95788 lncRNA downstream 410465 17661349 ~ 17665132 (-) False G64757
TU95787 lncRNA downstream 410465 17663705 ~ 17665132 (-) True G64757
XR_006251627.1 lncRNA downstream 414619 17659156 ~ 17660978 (-) False LOC122350842
XR_006251591.1 lncRNA upstream 16612 18096095 ~ 18103013 (-) True LOC122350292
TU96072 lncRNA upstream 46702 18126185 ~ 18128804 (-) True G64966
TU96110 lncRNA upstream 206002 18285485 ~ 18285734 (-) True G64992
TU96135 lncRNA upstream 285956 18365439 ~ 18365779 (-) True G65010
TU96136 lncRNA upstream 287943 18367426 ~ 18367640 (-) True G65011
XM_043246062.1 mRNA downstream 19320 18053359 ~ 18056277 (-) True si:dkey-63d15.12
XM_043246232.1 mRNA downstream 369106 17701512 ~ 17706491 (-) True LOC122350049
XM_043247691.1 mRNA downstream 376182 17697175 ~ 17699415 (-) True crybb2
XM_043247818.1 mRNA downstream 462981 17601258 ~ 17612616 (-) False kcnip3a
XM_043246666.1 mRNA upstream 462 18079945 ~ 18082578 (-) False si:ch211-170d8.8
XM_043246665.1 mRNA upstream 463 18079946 ~ 18082617 (-) True si:ch211-170d8.8
XM_043246652.1 mRNA upstream 27970 18107453 ~ 18112701 (-) True LOC122350290
XM_043246047.1 mRNA upstream 52011 18131494 ~ 18143145 (-) False LOC122349911
XM_043246044.1 mRNA upstream 52011 18131494 ~ 18143145 (-) False LOC122349911
TU95705 other downstream 674369 17325044 ~ 17401228 (-) False LOC122350953
XR_006251564.1 other downstream 713747 17359385 ~ 17361850 (-) False zgc:194007
XR_006251566.1 other downstream 713747 17359385 ~ 17361850 (-) False zgc:194007
XR_006251565.1 other downstream 713747 17359385 ~ 17361850 (-) True zgc:194007
TU95703 other downstream 731858 17323060 ~ 17343739 (-) False LOC122350953
XR_006251590.1 other upstream 27970 18107453 ~ 18112701 (-) False LOC122350290
TU96073 other upstream 75652 18155135 ~ 18157543 (-) True G64967
TU96164 other upstream 480184 18559667 ~ 18560334 (-) True G65033
TU96415 other upstream 951504 19030987 ~ 19039551 (-) False LOC122350102
XR_006251696.1 other upstream 1122794 19202277 ~ 19202377 (-) True LOC122351133

Expression Profile