RNA id: CI01000009_01692563_01725364.mRNA


Basic Information

Item Value
RNA id CI01000009_01692563_01725364.mRNA
length 1986
RNA type mRNA
GC content 0.47
exon number 13
gene id CI01000009_01692563_01725364
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1692563 ~ 1725364 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACTATTTGTTATCTTTAAATACTAGCTTGCAAGCTTACAAGAAGATACAGACAGGAAATCTGCCAAAATGTGATACATTGCACGACCTATCGTCAGAAAGATTTTTCCTCCAGAAAGCAAGAGGGAGTCTGGTTGTCATTACTGGTGAAAAGGAGGATTGCAAACCACCACCCACCCATCCAACATCTGGCATATGTTCACCTACATGGGAAGAATGGAGGCAGGTGGGTGGAGAGTGCAAAATCTCCCCAGAATCATCACTGAGGCGCTGTCGGACCTCCGACGGGTTGATCTGTAGCGGAAGAGGCGAGTGTGAGTGCGGGATTTGCATATGCCAGGTCACGGAACCTGGAACATTCTACGGACCGCGATGCGAATGCCATGACTGGGTCTGTCCGACATATGATGGGAAGACCTGTGCAGATCATGGGACATGCAAATGTGGAAAGTGTTTCTGTGATGATAACTGGTTTGGGGAATCCTGTCAGTATGAGGAGCAATGTTCCCTCTCCAGCAAAACCAGTAAAGACCGTTGCCGCAATGCCCAGGGTGTAGTTTGCTCCAATGCAGGCACCTGTCACTGTGGCAGCTGCATGTGCCATAATCCCGATGGGAAGGGCCTGATCAGCGGACACTATTGCGAGTGTGATGACAGCGAGTGTTTGGATGAAGACTCTGGAGAAGTTTGTGGAGGCCATGGAAAGTGTTACTGTGGAAACTGTTACTGCTCGGCTGGTTGGCATGGAGATAAATGTGAATTCCAGTGTGACATCAGCCCATGGGAGAGTAAGCGGAGATGCACATCTCCAGATGGCAAGATCTGCAGCAACAGAGGCACATGTGTCTGTGGAGAGTGCACTTGCTATGATGTGGATCCCTCAGGAGACTGGGGTGACATCCATGGAGAGAACTGCGAGTGTGACGAGAGAAGTTGCTATGCCATGTACGACAGATACTCGGATGATTTATGTTCAGGTCACGGCCAGTGTAACTGTGGCAGGTGCGATTGCAAAGAAGGTTGGGCTGGAAAGAAATGCGATCATCCTCTCTCCTGTTCGCTGTCTATGGAAGCCAGTCAGAAGAAGTGTCGGGGAACCTCCAGCCTGCCCTGCTTTGGCAGAGATTCACTGTCCCTCCGTACTGTGAGCCTGTGCTATGAGACGTGGCCAGAAAATGATGATTTATACGTCTGTTTACATAGAATTTCACCCATGATTGGAGCTATAAGTCTACTTGCTGCATCTATTATCCTGACAGCAGAAGCGAAATATTGCAAAAGAAAAAGTGGTAAAGCTAGTACTTCTCCCCAGATTGCTCTATATTCAGTACCAGCAAATGATGAGAAGTGTTTGTGGCACAAGATTGATATAGTCTTGGCATACATCATCAACAGTCTTTCCGGATATGCCAAAGAAAAACTTCAAAATAGGAACGGGGCTTTTGTCTTGGCACCTGCGCAAGCATGGCTCCCTAGAGAATTGAACTTGCCGGATGGCTGTCTCTCAAATATTGTGAAGGAATTAATTGTTTCGATTCGGACCAAAGCGCAATACATGATCAGCGAGGGAGCCATTAATCACACTGAAGCTGCCAGTGCTGCTTTCTCCATTTACGCACTCATAATGCCACCAGCCACTGTGAAAGCATATGGAAAAGATACACTTTCTCTGTCTAGTGCATCATGTGTTTCATACTGTCCGTATAAAGGGCAGTGTTTGTGTGGCCAGTGCACATGCCACCCACCCGGAGATAAACGCGTACACGGCAAGAACTGTGAGTGTGACGACAGGCAGTGTGAGGACCTGAACGGAGAGATCTGTGGAGTCTCCTTTCATGGCCGCTCTCAGAACATACACATTATGGATTGGATCAATACAGGCACAGAGGTGCACCCTTTCTTTAACAGAATTGAGTGCTTGTCAAAACAATCTTACTTTAAACTCTTAAAAGTTTACAGTAGGCGATATTTGAATTTGGATGTGAGG

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58221 lncRNA upstream 35193 1657059 ~ 1657370 (+) True G51110
TU58186 lncRNA upstream 206943 1485264 ~ 1485620 (+) True CI01000009_01454610_01484907
TU58135 lncRNA upstream 209611 1482718 ~ 1482952 (+) True G51062
TU58005 lncRNA upstream 212097 1446595 ~ 1480466 (+) False G50937
TU58243 lncRNA downstream 15248 1740612 ~ 1863136 (+) False G51125
TU58244 lncRNA downstream 15248 1740612 ~ 1863136 (+) False G51125
TU58245 lncRNA downstream 15248 1740612 ~ 1796482 (+) True G51125
TU58312 lncRNA downstream 124463 1849827 ~ 1854511 (+) True G51188
TU58318 lncRNA downstream 140080 1865444 ~ 1865801 (+) True G51193
CI01000009_01570544_01595199.mRNA mRNA upstream 97097 1570079 ~ 1595466 (+) True CI01000009_01570544_01595199
CI01000009_01454610_01484907.mRNA mRNA upstream 206735 1454224 ~ 1485828 (+) False CI01000009_01454610_01484907
CI01000009_01431700_01434463.mRNA mRNA upstream 258021 1430850 ~ 1434542 (+) False CI01000009_01431700_01434463
CI01000009_01402330_01407372.mRNA mRNA upstream 284808 1401061 ~ 1407755 (+) True CI01000009_01402330_01407372
CI01000009_01351236_01380055.mRNA mRNA upstream 312278 1351236 ~ 1380285 (+) True CI01000009_01351236_01380055
CI01000009_01733394_01738937.mRNA mRNA downstream 5930 1731294 ~ 1739468 (+) True CI01000009_01733394_01738937
CI01000009_01892219_01893628.mRNA mRNA downstream 166855 1892219 ~ 1893754 (+) True CI01000009_01892219_01893628
CI01000009_01897343_01919208.mRNA mRNA downstream 171979 1897343 ~ 1919516 (+) False CI01000009_01897343_01919208
CI01000009_01966898_01976924.mRNA mRNA downstream 241534 1966898 ~ 1977734 (+) True CI01000009_01966898_01976924
CI01000009_01990700_01991267.mRNA mRNA downstream 265336 1990700 ~ 1991387 (+) True CI01000009_01990700_01991267
TU58233 other upstream 10597 1680146 ~ 1681966 (+) True G51122
TU57959 other upstream 254208 1422847 ~ 1438355 (+) True G50926
TU57948 other upstream 922330 769841 ~ 770233 (+) True G50920
TU57430 other upstream 1596776 94202 ~ 94283 (+) True G50472
TU58306 other downstream 168871 1894235 ~ 1894364 (+) True G51182
TU58428 other downstream 529735 2255099 ~ 2350486 (+) True G51274
TU58708 other downstream 1336669 3062033 ~ 3062587 (+) True G51529
TU58745 other downstream 1477408 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58746 other downstream 1477408 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073292 False 1411 mRNA 0.52 8 NC_007120.7 31752628 ~ 31810803 (+)
bowfin (Amia calva) AMCG00014676 True 420 mRNA 0.50 3 CM030128.1 26585481 ~ 26588394 (+)