RNA id: CI01000010_03882122_03883663.mRNA



Basic Information


Item Value
RNA id CI01000010_03882122_03883663.mRNA
length 720
RNA type mRNA
GC content 0.45
exon number 3
gene id CI01000010_03882122_03883663
representative True

Chromosome Information


Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3882122 ~ 3883762 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGGGACCACAGCGGGATACGCGCTGAAAAAAGTTTCTGTTTATGTTTCAGCTGTGGCCATGATATTGTTTGCGATCGTGCAAATATCGCTATTGAAACTCCTGTCAATCTTTTCCCCGGGGCTGATGAAGAAAATACATCTAAAAATGGGAGAGAAGTCTACGATGACTCAAAATCCCAAATTCAAATATGAAGACTGGGGTCCATCTTTCTTTTCTCCGGTGTTCATTAAAACCGTGATCTCAGTGAACTGGTGCTCGCTGGGCCTGGAAGCGTTTGAGGGGTACGCAGCTCCAGACACAGCTTTATTCACTCTGGACGGAGAGAAAACGAGTATTCATCGTTTTCTTAAAGATGGTTGGGCCTTTGTAAACAATGTCGACATCAGTGTGCACAAAAACTTGGAGGAGAGACTGGCTGCGGCCCGAACCCTGGTCAAAGAAGACCCTCTCTGCCCTGTGGTTGTGGACGAGATGACCAACATCACTGCCAGCAAATACGGAGCCCTGCCAGAGCGGCTCTATGTCATTCAGAGTGGGAAAGTTCTCTATCAGGGTGGCATCGGACCTTGGGGGTATAACCCTGAAGAGGTTCGAAAAGTTCTGGACAAAATTAAATAAAGGCGGAAGAAGAGTTATATCCTTGACTGCATTTATATATTTGAAATTCTGAAATTTCTTTTCTGAAAAGTCCCCGTGTTTGCTTGTGACAGATACAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU71507 lncRNA upstream 35681 3818656 ~ 3846441 (+) True G62788
TU71510 lncRNA upstream 65617 3816031 ~ 3816505 (+) True G62791
TU71468 lncRNA upstream 95868 3781633 ~ 3786254 (+) True CI01000010_03781620_03785840
TU71462 lncRNA upstream 124321 3757200 ~ 3757801 (+) True G62748
TU71441 lncRNA upstream 177921 3703989 ~ 3704201 (+) True G62738
TU71601 lncRNA downstream 79986 3963748 ~ 3964163 (+) True G62868
TU71602 lncRNA downstream 80891 3964653 ~ 3965140 (+) True G62869
TU71604 lncRNA downstream 82827 3966589 ~ 3969431 (+) False G62871
TU71607 lncRNA downstream 82827 3966589 ~ 3967416 (+) False G62871
TU71605 lncRNA downstream 86049 3969811 ~ 3981486 (+) True G62871
CI01000010_03781620_03785840.mRNA mRNA upstream 96139 3781620 ~ 3785983 (+) False CI01000010_03781620_03785840
CI01000010_03778292_03781230.mRNA mRNA upstream 100682 3778292 ~ 3781440 (+) True CI01000010_03778292_03781230
CI01000010_03770735_03776382.mRNA mRNA upstream 105555 3770735 ~ 3776567 (+) True CI01000010_03770735_03776382
CI01000010_03764993_03769503.mRNA mRNA upstream 112619 3764993 ~ 3769503 (+) True CI01000010_03764993_03769503
CI01000010_03761210_03764319.mRNA mRNA upstream 117245 3761210 ~ 3764877 (+) True CI01000010_03761210_03764319
CI01000010_03902240_03911029.mRNA mRNA downstream 18344 3902106 ~ 3911455 (+) True CI01000010_03902240_03911029
CI01000010_03915860_03918633.mRNA mRNA downstream 32098 3915860 ~ 3919137 (+) True CI01000010_03915860_03918633
CI01000010_03920171_03935066.mRNA mRNA downstream 36409 3920171 ~ 3935859 (+) True CI01000010_03920171_03935066
CI01000010_03952874_03957173.mRNA mRNA downstream 69112 3952874 ~ 3957244 (+) True CI01000010_03952874_03957173
CI01000010_04010515_04020837.mRNA mRNA downstream 126753 4010515 ~ 4020898 (+) True CI01000010_04010515_04020837
TU70047 other upstream 550936 3328458 ~ 3331186 (+) True G61480
TU70029 other upstream 682214 3194155 ~ 3199031 (+) True G61462
TU69273 other upstream 2934578 946794 ~ 946871 (+) True G60842
TU69285 other upstream 2998608 865814 ~ 870598 (+) True G60854
TU69288 other upstream 3043690 821024 ~ 838432 (+) True G60857
TU71560 other downstream 6333 3890095 ~ 3893793 (+) True G62838
TU71580 other downstream 53995 3937757 ~ 3939945 (+) True G62856
TU71738 other downstream 564410 4448172 ~ 4449327 (+) True G62983
TU71841 other downstream 757079 4640841 ~ 4653993 (+) False CI01000010_04640858_04683752
TU71842 other downstream 757079 4640841 ~ 4651767 (+) True CI01000010_04640858_04683752

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU92206 False 267 lncRNA 0.39 2 NC_053117.1 40871799 ~ 40872375 (-)
tiger barb (Puntius tetrazona) TU92206 False 1171 lncRNA 0.42 4 NC_056706.1 9030865 ~ 9038464 (-)