RNA id: TCONS_00001524


Basic Information

Item Value
RNA id TCONS_00001524
length 5436
RNA type mRNA
GC content 0.42
exon number 8
gene id XLOC_000963
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5354489 ~ 5394791 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCTTTGTTTCTTGGGGCAGGACGCGACAGCATCTGCATGAGCGTTTGCGGTAAATCATGGCTGTACTGTGAATGGAAAGAGCTGCCTTTTTTTGTATATAAAGAATCCGAGCCGTATGATCTCAAGTAAGATCGAGACCCGactttaatttgattaaatcaaGGATTTTCTGGTTTTGTTCACCGCTTGCTGGGCTGGCCGTGTATGAAAATGGACCAGGCGGCGAGCCGCTACCAAGTGTTGCACAATGAGGATGACTCCTCTGAAGGGGCCGCCAGTGCTGAACCGTCCACATCCACCCAGGCCGTTGGCGCTTTGGAGGGAATCAGCAACCTAGCAGTGGATACAGAAGCTCCACCTCCTCCATATGCAAGCGTGGCACTTGGAGCAACAGCTGCACCAGAAAGCACATTTGCAGGGGACTTTCCCGTTCCTCCACCATACAGCATTGCCACGTCTCTGCCCACTTACGATGAGGCAGAGAAGGCCAAAGCAGCAGCCATGGCTGCATCCGCGGTGGAGGTCATTCCACGAGATGAAGATTTTCCGGTTCGGGATGACTTCAGTGATGCAGATCAGCTGAGAGTGGGAAATGATGGGATCTTTATGCTGGCCTTTTTCATGGCCTTTCTTTTCAACTGGATCGGGTTTTGCTTGTCCTTCTGTTTGACCAATACCATTGCTGGTCGATATGGTGCTATCTGCGGCTTTGGCCTTTCTCTTATCAAGTGGATCCTCATTGTCAGGTTTTCAGATTACTTTACCGGGTACTTCAATGGACAGTACTGGCTCTGGTGGATTTTTCTGGTTCTTGGGCTCCTGCTGTTCTTCAGAGGGTTTGTGAACTACCTGAAAGTGCGTAACATGTCAGAAAGCATGGTTTCCTCACTCAGAACCCGCTTCTTCCTCCTGTACTAGAGGTCGCCTCACCAAAACATTCCTCCCTAATGTGAAATTCCTTCATGATTTGCAACCCGTCAAATGAACTGGACTGGATCCCACTGAGGGGAAGaggaagaagagagagagagagagaaaatcaaacacaaaacgAGTATCTCTGCCAAATGTTTTGAACTCAACCCGGTGAAAATGAACTCTGAACGAGTGCAAATCAGCTCCCAGTATTCAGTTTTTTCAGAACTTCCCTGCCTCCCAAAAACTTCTTAATACTGTAttgcaaacatacacacacaaaaacttaccaaacattgcatgaaatgtaatGGATTTATGTGTATCAGCAAAAATGACTAGAAAATATGCAGTCCAGACCAATGTTGGGTACGTTACTTCAAAATAGTAATTATTAGTTACTAATTGTATCATTaaattactttgtctgaaaagtagCTTAATtgctcaatattttatttaattacttgactCAGTTCTACTTAAAATCATCGTAAATATCAAGCATGTGCATCACTGTTTCTTCATCATGTGTAATCGTCTTTGCTTAGTTCTTTGCTTAGTCCAAAGTGCAAAATTTTCATATGTGTCTTTTTTTCCTGTATTTAAATCCGGaattttttttcacacacacaaaccttgCACACCGAGTCCAATACATATGAATTAATCTATtgcaaaataattcataaaacaATAGATGAATTACCGGTGTGCTAACATTCAGGATATGCGCTTGCAGCGAGGTTGCAGTAAAAAACCATGAGctctagcatttacagcgagggaatgacatccgatgccgtacagagtttgttgttgccTTAGAAATAAGTtctattgattacatattatatatattatttacataatgctttcagtatattataacagctcgtcacccagtgataaacacagttattcagcaaaattaatgttgaagtgagcggcgttcgtctgacaggtccatttgcgatagcaccctcccaatagATATTGGGTAggatgaaatggccaagcataCAGCCccaaaatatacaaatatctcattgaaactccaagtgtttttacaagagaagttaaaggcctgtaagtctttggatgccaacaattttgttctgtgtggtcatgtgcaagaaataatgctccatgattaccagattgaAAACTTTGTAGTAccaaaaaccgaggttctgcctagccaaagacaaggaaagaagacggagctaTACAAGGGCTGgctaatcatcaacaagcaaaacaacagcattctgacagcgaactgcacctgtagcagggtatgtgaacttacatgtttatatttcaatctaagcattcagtgtcggCAGTTTAATACACCATACCAACtgtttttgctaaaatcattgctgcaatcaaaagcGGGTAATGTTTATGATTCAGCGTAGCGTAAACTTACCTGACATAAAATAAGAAATGCAGAGTCcaacatttttaattaggtcctcactccattcagctcccctttagccaaagacatctgcagttggcattaaaaccagtgtggtgtacagtaaaaTTTTAGTTTTGTTGAAGCCTGCATTGTTTATAGCAgaggtgctcaatcctgttcctggagatctaccttcctgtacagtttagctcagGGATGGGcgaacttgatcctcgagggccggtgtccctgcagagttttgttccaacactagtcaaacacacctgaacaaactaatcagtgtcttcaagatcacttgaactctatagggaggtctgtttgaatagggttggagctaaactgtgcaggtcaccggccttccaggacagagattgcccacccctggtttagctcctaccctgatcaaacccacctgaaccaattaatcaggacctgaaatccacttgataattacagacaggtgtgtttgataagggttgcaactgaaatctgcagaaggtagatctccaggaacaggattggccacccctggtttataGTGTATGTGACATATTCTGAGACAAAAACGTAATGTGCATGTAATGGACCTTTTTGTAATAACAGAGGtttaataacagaaatttaccagaaatctaaatttaaggaaatttctgtaatttaatgtcagttattttacagtaaatttctgtagattaacggccgttattttacgtttttttttcggcaccccagctgccgtaTATAAACCGTAaagttacagattttttttacagtgcacattttgtaatagacgtgccaggcacgaaagcttgtaACAACAGTAACTAAAGAGGGTGgtgcttagcgaagggtcagttgcTGGATTATATTGAGCATATAGTGTCACACTAGAGGACATGGTTTTCAATGACAAAAATCTATCATTGttttagaaatgtgtatataaaaaaatagccaCTTGTAAAATTAGGCATCTTTTCAATTTATAATAGTTGCCAAATATATGCTTGAGCCAAAATACATAATAACACAGCAGTTTTTATAGAAGTCAAATAACTGAtgacatttactgcattttaattgCTACTCATATTCAGTTCACTACAGTGAAAATGCTACGTCACATCAACAAACTGATTTGGGCTGTTGAATTTATGCACtgcattaagggtgctttcacactagcacttttggtccgcacccaggttcatttgacgtcatagtacggtacgtttagctagtgtgaacgtgtcttctgaactcgggtgcgcaaccgtgaaccgtaccagagtccgcctgaaagaggtggtctggggtacggttcatgagAACTCTAGtatggttcacttctgatgtaaatgcaatcataccaaataacggaagtgaaacgccaactgtacaacaaactatcgttttcataacgttcgttcgttcgtgtgtgtgtgtgtgccacgTTTCGTAACTTGGTGACGCGTGCGGgtctgagccagggcaaacacagtgatgcaCAGGGATGTCTGCTTGTCTACTCCAAAAACAGCTCCTGCAGACGCTGTGTGATGTCTTGaatgtttctaacatttttgaggcagatggacgcgagtcgctttctgcatgtccaaaaccaaaagcttcagttaaagcagaatgtacgcgatgtgcggacgtctttccattttggcaCTTGCTTTCGTGACTGTCGCCTAGCAACggctgtaaacaaaacagcagctcagtgatgcaagcgtaccggggttcagaaggaaaaaagacagtatgaacacaaaacaaccgaggaggtggcaaggggagacaatcgaacttgggtacggtccaggcaattgaaccaagtgtgaaagcaccctaaaagatctgcgtgggactaaattttaaatcccgcttccgccaggttttagcccgaacccgaccgctcctgcttgtattcagcatttgttgtcccgctgcccgacgcgccctgccccgttttctacccgccacgCCCGTTCCTGCTAAAGAGTGGGGGGAGAActaaaccgaaaaccacccagctatacagagtccagacagcctataacaagctgtctgtatcaacacacacacacacacacacacacataagcgcCAAGCaagtgacaaacacacacacaccaacaccaacaaacaagctaaacgcagcatcacgctgtctcattcacacacatacatatgcgaGCGAgcgagtcgggagcgatattgctagactgccgctcccgtccaaaattaaaccagttactgACCGCTCCCGTGCTTTTTTAGGAAATTTATTCCCatgccgcagaaatctggtcgggtcccgcggctgcagaatgcagacctctaccctAAATAACTAATTAGATTACCTAAAAAATAAAGAGAATCCTTTACTTTTTTCagattaaaagtaatttaattacagaaacGAGTTactttgtaattaattacacccaacactggtcAAGACCTCCTATGCAATGTCTTTTAACAAACTTGGTTAGATTGATGCTACTAGACTAGTTTAATTCCCTTTTGCTTCATTGCATCCAAGGCCTTGATTGCATTGCAGTGTCAATGAGAGAAGAATAGTTTTAGGTAGAATTTGACTAGTAAGCTATAATTGCAGTTTCTCCTCTTCTTAACTCTCGCTTAACTTTATAGTAAATGATTAAGTAATTTCATTGATGTGTTTCGAACTGGAAACGGAATTTGTACTTATCCTGAAATATATATTTGCCTTTTGCACCTTGGTTTAGTTTCCTTCCTCCCTCTTTTGATTTCAGTGTTTGTTGTTATTAAGTTGTGCTCAAGCTGTGACCTGCTTAGATGACTTTAGTTACTTGAATGCCTGAATGCTAATGTCATTTGTTTCTATTAATCACAAGCCTCTTCAGCAATATCAGATATTCAGACAAATGCATGGTTAACTCAGCGGATTAACTGACTGATCCAGTAAACAGACAATACTTAAGGATTTTGGATGAGATGATTGTGTGCTGTATGTTTATTCTCTTGTCTTGCATAATGCCAATAAAATTGGAAACTCTGCGta

Function

GO:

id name namespace
GO:0007034 vacuolar transport biological_process
GO:0031398 positive regulation of protein ubiquitination biological_process
GO:0030001 metal ion transport biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0050699 WW domain binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2662 Predicted to enable WW domain binding activity. Predicted to be involved in metal ion transport; positive regulation of protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within vacuolar transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and perinuclear region of cytoplasm. Orthologous to human NDFIP2 (Nedd4 family interacting protein 2).

Ensembl:

ensembl_id ENSDART00000103724

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003315 lncRNA downstream 2047 5350872 ~ 5352442 (-) True XLOC_000962
TCONS_00003314 lncRNA downstream 157768 5195698 ~ 5196721 (-) True XLOC_000961
TCONS_00003313 lncRNA downstream 157880 5195078 ~ 5196609 (-) False XLOC_000961
TCONS_00003312 lncRNA downstream 200661 5148593 ~ 5153828 (-) True XLOC_000960
TCONS_00002903 lncRNA downstream 569029 4783785 ~ 4785460 (-) False XLOC_000958
TCONS_00001530 lncRNA upstream 111772 5506524 ~ 5509585 (-) False XLOC_000965
TCONS_00001531 lncRNA upstream 115052 5509804 ~ 5511662 (-) False XLOC_000965
TCONS_00003316 lncRNA upstream 141586 5536338 ~ 5543063 (-) True XLOC_000965
TCONS_00003317 lncRNA upstream 619978 6014730 ~ 6024808 (-) False XLOC_000967
TCONS_00003318 lncRNA upstream 626764 6021516 ~ 6024808 (-) True XLOC_000967
TCONS_00001512 mRNA downstream 2059444 3100244 ~ 3295045 (-) True XLOC_000951
TCONS_00001510 mRNA downstream 2896943 2454094 ~ 2457546 (-) True XLOC_000948
TCONS_00001508 mRNA downstream 2901304 2448051 ~ 2453185 (-) False XLOC_000947
TCONS_00001509 mRNA downstream 2901315 2450140 ~ 2453174 (-) True XLOC_000947
TCONS_00001506 mRNA downstream 2905094 2446996 ~ 2449395 (-) False XLOC_000947
TCONS_00001526 mRNA upstream 55025 5449777 ~ 5455502 (-) False XLOC_000964
TCONS_00001527 mRNA upstream 55118 5449870 ~ 5455498 (-) True XLOC_000964
TCONS_00001528 mRNA upstream 109376 5504128 ~ 5542565 (-) False XLOC_000965
TCONS_00001529 mRNA upstream 109376 5504128 ~ 5543065 (-) False XLOC_000965
TCONS_00001532 mRNA upstream 141586 5536338 ~ 5542565 (-) False XLOC_000965
TCONS_00001523 other downstream 276001 5078371 ~ 5078488 (-) True XLOC_000959
TCONS_00001521 other downstream 1143837 4210498 ~ 4210652 (-) True XLOC_000957
TCONS_00001518 other downstream 2056240 3298112 ~ 3298249 (-) True XLOC_000952
TCONS_00001517 other downstream 2056401 3298006 ~ 3298088 (-) False XLOC_000952
TCONS_00001516 other downstream 2056553 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001538 other upstream 826129 6220881 ~ 6222249 (-) False XLOC_000970
TCONS_00001542 other upstream 1058652 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001543 other upstream 1747287 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001545 other upstream 2179599 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001549 other upstream 2237367 7632119 ~ 7650072 (-) False XLOC_000978

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_02670695_02682116.mRNA True 1049 mRNA 0.48 9 CI01000299 2670596 ~ 2682116 (-)