RNA id: CI01000299_04186183_04196219.mRNA


Basic Information

Item Value
RNA id CI01000299_04186183_04196219.mRNA
length 4765
RNA type mRNA
GC content 0.39
exon number 12
gene id CI01000299_04186183_04196219
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4184967 ~ 4197884 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATAATGCTTCTTCAACTCTCTCGATGTAATGGGAAATATCTGACATAGAATAAATATTTTAAAAGTTCATTTATAACAATATTTACAACATCTTTCAATGTTCCTGAAAATGTGTTCTGGTCAATAAACACTGGTCAAACAGCCAGGAATACTTACAGTCCTCCGAGGCATTGAGCTGAGCTCGTGCATTCCTTTGAACTTGTGCATTGTTGGTTTTGAGAAGTAGAATGGTCCAAAAGAAAGCACAAAATGAATTAAAACAATACTTTGAAGCAGTTTTGGTAAACAGATAGTATAAACAACTGCTGTGCTTTTTCAGTAACAATTTACAAAAACATCATATTTTGAAATGATGCAGAATACAATATGATGACAGATGAATTCCTGTCCGTTTACACCAGTTTACAGTGTTAAAAATGTACAAAATGCACTTGCCAAGAGCTGTACATGGATTAATTTCAGCTGTTCTAGGGCTTGCAATGGTAGAAATGATCTGGTAGTTTAACTTTTAAATGAATGTATTTTCTTTTTTTCACAAGCAATGATACATACATAATAGGATACAGTATGTAAGGTTATAAACTTTAGAGATGACTTGTTATTCAGCAGACAGTGCTGCTCTGTTCACGCATTATTATGGATAAACACCGCCCTCTACAGGGTATTTCAGAGATATAAAAATCAGCAGAAACAAAGCATGCAGCCTAATAATAATGATTCAATAATCACATTCATAACAATTCACAGTAAAAAAATATATATTTTGAGAATGAACATTATTTATCTATATACATAGCCTAACATTATTAGCCTAGTATTATGTTCAATAACATTGCAAATAATGCATGGCCATAACTTTAAAAAGTAGGTGATGATATGGTAAGATTAGGAGAGTGAGAACAGTGTGTATTTACTGATAAACTGTAATTTAGATGATTGAGTTTATAATCTCAGTCAAAGCTGAATGACCTTATATGAAAATGGATGGATTGTAATGTGTAGGCTATAAAAATATTTAGGCCTATAGCCTACAAGAAATCCTGTGCGTCATAAAGCCATCCATTATGTCACTTTGCTTATCTAAATGTGATGTAAGGTGTACTTTTGCTTTACCCTGGGCTAAAAGCTGTATGTTGACTGTGAAACACAGTAGAATTTAATTATATGAATTTCCCTGACCGCATCCGTGTGCAGTGTGAATGTTCATCTAACCTGTTAACATGGGCACGGAAATAAATAACGGAATATATGCTATATGTGCACCTGGCGTCAAATGCGTTTGTTTGTTTGTACTGTTTCTTATTGTTTATGCTAATTTATCCGGTTGGGCGTGTTCAACGTTTTGCACTTCTGCCCGTAAACATGCAAACAAATGAGTGTTTCCATAATAAAGTTTCTGCTCACTTTGTCAATGAGTGACCGGACTGTACAATAAACCTTAAAATATGATTATTGTACCGTGCTTAAAGGGGCGAAACGAAACTTTTTTGATATCCAGGAAATGAAACTTAGCAACGTACATAAACGCTTTAGGATTCACTTTACGGATAAGAAACAGCATCACTCTGAGACAGTCCTATCGAGGAGTGCACGAACAGACAGCTCCTGATATATCGACGTGAAGTATTTCTCTGATATTTTGACCTTTCTGACGTTGTTTAAGGATGGAGAAAATGAGTTACACGTTCAGTCAGCACTATGAGGAAAAAATCCGCCCTTGCATCGACACTATCGACAATTTACGGTCTTTGGGAGTCGAAAAGGACCTGGCGTTGCCTGCCATCGCCGTCATTGGAGACCAAAGCTCAGGAAAGAGTTCTGTTCTGGAGGCGCTGTCAGGAGTAGCGTTACCCAGGGGTAGTGGAATTGTTACACGATGCCCTCTTGAGCTCAAGATGATAAGAACTAAAGGCGAGGAGAAATGGCATGCGAAAATCAGTTACCAGAACCATGAGGAAGACATTGATGACCCAGCAGAAGTGGAGAAGAAGATTCGTGAAGCCCAGGATGAGATGGCTGGAGCAGGTGTTGGTATTAGTGATGAACTCATCAGTCTGCAGATCACCTCTGCCAATGTTCCTGACCTCACTCTCATCGACCTTCCCGGGATCGCTCGAGTGGCAGTCAAGGGTCAACCTGAGAATATTGGAGATCAGATTAAGAGACTGATCAGGAAGTTTGTTACAAAGCAAGAAACCATTAACCTGGTTGTGGTGCCATGCAATGTTGACATCGCGACCACAGAAGCATTGCAGATGGCTCAGGAGGAGGACCCTGAGGGCGAAAGGACTTTAGGCATCTTAACAAAGCCAGACCTGGTGGATAAAGGCACTGAAGGGACAGTGGTAGACATTGTGCATAATGAGGTCATTCACCTTACTAAAGGATACATGATTGTAAGGTGCAGGGGACAAAAAGAGATTATAGATCATGTCACTCTCAATGAGGCCACAGCAACAGAGAACGCCTTCTTCCAAGACCATCCTCAATTCAGCAAACTCTATGAAGAAGGTTTTGCTACTATTCCTAAGTTGGCTGAGAAACTAACAATTGAGTTGGTTCATCACATTCAGAAATCCCTACCTCGGTTAGAAGAGCAAATCGAGGCGAAGCTCGCAGAAACACAGAAGGAACTGGAGGCGTATGGCAACGGACCCCCATCAGACCCTGTAGAAAGACTGAGCTTTCTCATCGATAAAGTTACATCTTTCACACGTGACACCCTCAACCTGACCACCGGGGAAGAGATTAAATGTGGATCAGATCTACTGATTTTTCCAGAACTACGTGAAGAATTTGCAAAATGGAATGGCTTCTTGGATCATTCAGGATATTTATTCAACAGGAAGATTGAGAAAGAAGTTGACAACTATGAAGCCAAGTATCGGGGAAGAGAGCTTCCAGGATTCATCAATTACAAGACCTTTGAGGGGCTTGTTAGGGATCAGATCAAGATGTTGGAAGAACCTGCCTTAAAAACACTGAAGACCATCTCTGATGTGGTTAGAAAGAAGTTCATCCAACTGGCCCAGTACAGCTTTGTTGGATTCCCCAATCTTCTGAAAATAGCAAAGACTAAGATCGAAGCCATCAAGCTGGATAAAGAATCCCAGGCAGAATCCATGCTGAGGACCCAATTCAAGATGGAGCTCATTGTTTACAGTCAAGACGGCACATATAGCCAGAGCCTGCAACATACAAAGAATAAGTTGGAAGAGGATGAATACACTACAGAAAGTTTTAATTGCATGAGCGTAGGCATTTGCACAGACAATCATGCCACCTTGCGTGAGATGAGGTTGCACCTTGAGTCCTACTACTCGATTGCAAGCAAGCGTCTAGCTGACCAGATCCCAATGGTGATCCGCTATATGTTGCTCCAGGAAGCAGCTTTGGAGCTGCAAAGGAACATGTTGCAGTTGCTGCAAGATAAAGATGATGTAGACAACCTGCTTAAAGAAGACTTTGACATTGGCCAAAAGCGGGAGAGCTTACTGAGTCGTCAGAAACGTCTGATGAAAGCACGCAGCCTCTTGGTTACCTATTAGAATTCACTTCATATAGTCAATTGCAACGGTTTTAATGCAACAAAATCATATGCTCACAAGGTTATAGCTTGACATATTACATTTACATTATTTTGTACATTTAATCATTGAGTTATGAAGTGTCCCCCATATACGCAGTGTGCCAGGAATTTTGGGCATCAGCTGTTATCATGTCATGATTTTATCAACTTCGACTTCTTAGTAAAGCCTGTTTTATCCATGAGCAATTTTGAAACAGCAATCCATGCCTTTGTAACATAGCGTGACTACTGTAATTCACTGTATTATGGCATTTCTCAGGCTTCTATTTAACCGTCTGCAGCTGCTGGACTGATCAAAGGGAAGTCCTTTCTGATATAATTTCTTTGCACTGGCTCCCTGTCAAGTATCAGATCGATTTTAAACTCTTATTATTTGTCTACAAGCCCCTCAATAACCTGGCACCTCAATACTTAACTGATTTATTGCTTCCGTATACCCATTTTTTTTTTTTTTACGGGTGGAGAATATATATATATACAAAGGCGGATTAGAACCCAGAACCTCTGGCACGCTTAACAAAAGTTCTACCGCCAGACCATTAGAACTCACAAACAATTATATGGGATCTATGTGTTATAAAAGCCCATTGTAAATGTACGTTCACTTGTGTCTTTGAGACGTGTGTTGGCGATCAGCCAACGTTAGAGCACGCTGTCATCACTGCAGCGTAAAGACACCACACTATTTCCAGCAGGTGGCACTGATTAGCGTTTTTAGAATATAGTTCTTTATGCAGCGGGTGAAAACCAAACAGACATTATGCTTTCTTCACGTTTGGTATTGTGTGCCTATATAGTATGAAACAAGTAAGTGAATTTATGCACTGTAGTTTATTAATTGTTTTGTTAAGGTGTATGATCCATTTATGAGCATCCTGAATATATATCAATCTTGGTATGTTGATATTTGTTGTTTATGCTTTACATAGTAGTGATTTGATTTGTGTTGTGGACGTGTTCGTATTATATTCTATTATATATATATATATATATATATATATATATATATATGTTTGTTATTTAATTAATTTAATTCTTTGTGTTATGTATTCTATTATTGTTAATTATTTCTATTTTATTCTATGTTTCAGACCACACACACTCAAAAATCAATGTACTTGCACTTATGTACTCAAAGTTTTATTCACACTGTGGAATTATGATGGTGAAATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K14754 MX; interferon-induced GTP-binding protein Mx

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467968 lncRNA downstream 5340 4156825 ~ 4179627 (-) True G407296
TU467991 lncRNA downstream 55747 4129003 ~ 4129220 (-) True G407318
TU467958 lncRNA downstream 57327 4123317 ~ 4127640 (-) False G407288
TU467959 lncRNA downstream 57327 4123317 ~ 4127640 (-) False G407288
TU467957 lncRNA downstream 58244 4121679 ~ 4126723 (-) False G407288
TU468003 lncRNA upstream 9913 4207797 ~ 4208154 (-) True G407330
TU468013 lncRNA upstream 61598 4259482 ~ 4263461 (-) True G407340
TU468016 lncRNA upstream 68470 4266354 ~ 4266553 (-) True G407343
TU468017 lncRNA upstream 69335 4267219 ~ 4267442 (-) True G407344
TU468021 lncRNA upstream 74028 4271912 ~ 4272172 (-) True G407348
CI01000299_04171373_04175441.mRNA mRNA downstream 9526 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04158468_04164223.mRNA mRNA downstream 20252 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04136702_04142005.mRNA mRNA downstream 42842 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_03492360_03492614.mRNA mRNA downstream 691823 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_03341031_03366645.mRNA mRNA downstream 818239 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_04227918_04239792.mRNA mRNA upstream 29636 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
CI01000299_04242809_04251680.mRNA mRNA upstream 44313 4242197 ~ 4251865 (-) True CI01000299_04242809_04251680
CI01000299_04370401_04385955.mRNA mRNA upstream 172517 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
CI01000299_04398464_04403711.mRNA mRNA upstream 198590 4396474 ~ 4403711 (-) False CI01000299_04398464_04403711
CI01000299_04456420_04468754.mRNA mRNA upstream 258345 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
TU467961 other downstream 20643 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2166917 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2303979 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2524967 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3109076 1070607 ~ 1075891 (-) True G404372
TU468104 other upstream 278110 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 728084 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1243453 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1620685 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1629952 5835889 ~ 5835989 (-) True G407805

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001544 True 2646 mRNA 0.41 12 NC_007112.7 7562316 ~ 7570181 (-)