RNA id: TU464249


Basic Information

Item Value
RNA id TU464249
length 997
lncRNA type intronic
GC content 0.42
exon number 1
gene id G403857
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 428433 ~ 429429 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCCTGATTTCTTTGAGGGAGGGTCTATGGGCATGTAAATATATGTTTTTTTCAGATCTTTCGATCTAATGGACAAAATAATCTTGCGCAATTTACATATGAATGTGCCCGAAGACAACGGAAAAACATACGGAGAGCAGCCGTTTTTGTTTCTGCTCTGAGAGCCGCAAGGCCACGCCATGCGTGTTAGAAATCAGGAATGGTGGGAGAACATTGTGCTTGGTACGTTTTTCTTCTTCAATCCAAACTTGGGTCTTCAGCCAACAAAGTTCAAATCCAGTCTGGCTAGTGCGCTTCCCATATTGTTTACACATTAAGTCAGTAGGTGGAGAGTAGACAGTCTTTTGTGGCTGAACACATTCGACTGCATGAGCGTTTACACTACGAAAGCAATCCAGTCGAATGCACTTTCGACTGCCACTGGAAGTGATTGAAAGTGGACAAGCTCAAAATGTTTTACACCCCATTTACTCATGTATTTAGCATCGTCCACTTGTGATCCGATTGACCAAAACGCATCTTATACCAGGTGTAAACAGGGCCATAACTTCACAACCACAATGTTCTAGATGAGCTGTGAGGGAACGTCTAGTTCATCAAACTCTTAGTCAAAATCAATTTTCCATGAAATGGCCCTTTACAGTCAATGGAGGAACACATCAATCGTTTGAAGCCTTTGTAGACATTTTCCATCATCATCATATCAAACATGAAATCACACACTATAAAACTATTTGACTACTTCACACAGATCCAAACATGAACAGATCAGCAGCTGTGGGCATTTCCCCAGACACAGCGTGATGACTATCTCAAACAGACTCTCTGACGTGATGACTGAAGAATCCCAGAATAAAGAGTCTTTGTCTCCTCATTCTCATGTTCTGGATACTGCAAGACTTTCATCAGGACTCCAGACCTTACAAGAATCTATTGTGATTCTATACCATCATGAATAACAGGCAACCACCTATCAACAGCTTATTAACACCTTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464248 lncRNA downstream 1281 426870 ~ 427152 (-) True G403856
TU464247 lncRNA downstream 2830 425311 ~ 425603 (-) True G403855
TU464246 lncRNA downstream 3280 424899 ~ 425153 (-) True G403854
TU464245 lncRNA downstream 4099 424126 ~ 424334 (-) True G403853
TU464211 lncRNA downstream 51962 364147 ~ 376471 (-) True G403822
TU464250 lncRNA upstream 206 429635 ~ 429965 (-) True G403858
TU464232 lncRNA upstream 3930 433359 ~ 433589 (-) True G403840
TU464233 lncRNA upstream 8880 438309 ~ 438786 (-) True G403841
TU464230 lncRNA upstream 15360 444789 ~ 446479 (-) True G403838
TU464258 lncRNA upstream 37245 466674 ~ 466935 (-) True G403866
CI01000299_00185106_00209299.mRNA mRNA downstream 219134 184774 ~ 209299 (-) True CI01000299_00185106_00209299
CI01000299_00169255_00170695.mRNA mRNA downstream 257447 169223 ~ 170986 (-) True CI01000299_00169255_00170695
CI01000299_00448948_00449565.mRNA mRNA upstream 19434 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_00452374_00452868.mRNA mRNA upstream 21912 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_00670925_00672195.mRNA mRNA upstream 241251 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_01003547_01034507.mRNA mRNA upstream 573890 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_01057889_01063623.mRNA mRNA upstream 628391 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
TU464604 other upstream 241405 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU464792 other upstream 641178 1070607 ~ 1075891 (-) True G404372
TU465225 other upstream 1230226 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 1426210 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 1588258 2017687 ~ 2018050 (-) True G405053

Expression Profile