RNA id: TU467508


Basic Information

Item Value
RNA id TU467508
length 1304
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G406872
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3174373 ~ 3175921 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTTATTACTTTTGTTGTTGCAGCTATATGTTCTCTTATAATTTCTATACAAAATGTACAAAATTCATGAAAATACAGAAGTCATGAAGAAATTATGGTGGATATGTAAGAGCTCACTAAATCAGGTGCTTTTTTTTATGCCCAAGTCCTAATATATCGTTTGCTTACTTACATTTAAAGAACATAAAATAAAGTCAAATTAAACTCATTAACAAAGCAATGAACCCAAATAAATCTATCAAATTAGCCCGTTCAGTAATTCCAATGTGTTATCACTTCAGGATATCAAAATATCGAGGATCGTTACAAAATGGTCAAATAAAGCATTCTTTGATCAGTGCTTTGTGGACGAGGTATGGCATCAACTATCTAAACATTACGTATATCTTAAACTAAATTGTAAAACTGATCCCTTTTTGCTTTTCTTCTACCCATCCTCTCTGAAACCAAGTGAACAAAACCAGGCTTAAATTCAAACCCAACTTGAAAATAAAGGCTTTCTCAGGAAGGAACTTCATAACAATACAGCCAGACGAACTATTCAAAACAAGAGCACGCACTTCCGGCATAAGAGAAGACCCCTCCGTTAACTTATGTAACATTATTTTTGTTTGTATGCATTAGAGGTTTCATGTAACACCTAAAAACAACCAAACCCATCCGGAAAAGGAAAGAAAAAAAAAAAAAAAACCCGTTCATTTATACTGCATTAGCGTGCACTGCATCACACGTCAAAATTCAAACTATCAATCAGCACATAAACCTCCTTACCACCTTCCCCCCAACATACTGATATCACACCACAACCCGGTTATATCCAACCTATATCACTGGTTCATATACAACAAGGGAGTTGACTGTGTATGTAAACTTAGCTGGTTTATTTTGCTATTGCGAATTGGGGGAAACTGCCCGTGTGGGCGTTACAGATCACTTCGGATACCAAACAGTCTTGTGGCTGGATGTCCAACGAGGGGTCTGAGTAGGAAAGAGTAGAGAGGATGGAGCCCCAGAGACAGAGCGCCATGTTCTGATAGGATGAAGAGGTAGGCTGCTCGGGCACAGCGGTGGGCCGTGGCTTCAAGCTGTCGTTGGTCAGGATGCAGCAATGGAGGTTTGAGGTCGGCTGAGGCATGTCCAGCAAGAGCTCAGGGAGGAGCGTTGGTGTCTGAATGGATGTGTGCGTAATCGGGTCCAAGTAAGTGTGGCTGGTGTTAGGAAGACGGCTGAGCTGGTGGATGACAGCGGAAGAAGCAATGAGGCCGGCTACGCTTGTCAAGTACAGGAGACCCAACATACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467526 lncRNA downstream 5118 3166531 ~ 3169255 (-) True G406889
TU467520 lncRNA downstream 19255 3154600 ~ 3155118 (-) True G406884
TU467504 lncRNA downstream 53120 3120997 ~ 3121253 (-) True G406868
TU467475 lncRNA downstream 116367 3057706 ~ 3058006 (-) True G406842
TU467422 lncRNA downstream 244824 2929340 ~ 2929549 (-) True G406790
TU467498 lncRNA upstream 20372 3196293 ~ 3196999 (-) True G406862
TU467554 lncRNA upstream 63388 3239309 ~ 3239848 (-) True G406912
TU467578 lncRNA upstream 113541 3289462 ~ 3295137 (-) True G406932
TU467588 lncRNA upstream 127831 3303752 ~ 3305190 (-) True G406942
TU467587 lncRNA upstream 136462 3312383 ~ 3316446 (-) True G406941
CI01000299_03104921_03106385.mRNA mRNA downstream 67988 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 117085 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_02891830_02905146.mRNA mRNA downstream 269227 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
CI01000299_02850281_02876863.mRNA mRNA downstream 297510 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
CI01000299_02833341_02845817.mRNA mRNA downstream 328503 2833090 ~ 2845870 (-) True CI01000299_02833341_02845817
CI01000299_03206204_03214303.mRNA mRNA upstream 30264 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03341031_03366645.mRNA mRNA upstream 164845 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03492360_03492614.mRNA mRNA upstream 316293 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_04136702_04142005.mRNA mRNA upstream 958899 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_04158468_04164223.mRNA mRNA upstream 982080 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
TU465509 other downstream 1156323 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 1293385 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1514373 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 2098482 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2501517 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 965197 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1300073 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 1750047 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 2265416 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2642648 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU1411 True 216 lncRNA 0.39 1 NC_053112.1 3081747 ~ 3081962 (-)
tiger barb (Puntius tetrazona) TU1411 True 1740 lncRNA 0.53 2 NC_056699.1 4935720 ~ 4937688 (-)