RNA id: TU466732



Basic Information


Item Value
RNA id TU466732
length 1654
RNA type TUCP
GC content 0.44
exon number 2
gene id G406161
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6237838 ~ 6300508 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTCTTTTTTTTTTTTTTTTTTTTCAACATTTGAAAAAATTATTTATTTTTCATATATAACCATGTTCTGCCATTGATTATTATATATACTCACAAGTGTGCCATTTTTTTTAATTGCAAAAGTACATGTTCTGGTGTTTGCCAGTGTTCAGTGTTGTGGAAGCGTCACTCTTCGGGAAGTTGCAAATTTAACTTGAGCACAAAATTGGAATATCACATAAAACATTTCCAAATAAAGCAGCGTTTCCATCCATACAATAGAACAAAATTATCACTTTCTGGGAAACTGGCACAAAATATCAGTAATAAAAATTGAAGTGGCTCTTTTTCCTCCATCATAAATGAGTTTGTCTCAGAGCGTCAGACGAAACACAAAAACTGTCATGTGATCTTGCGTTCGGATGCTGGTGTTCGGGAACACAATCGTGTGAGACGCTTCTGGAGGGAATTAAACCAAATCATTCTGATGACAGACTTTGACTCAGACGTTTCAGAACCACCAAACCAACATTTGAGATGCTGCGATGCGATTGGTCCGCTGGTTAGTCCAGTTATCCAATCACAGAGTCACACGAGCGTTTTGTTGTGCATCAAAGGATTATTCAGTAAATGTGTTTCCAACGTAGTTTATGCACGTCTTCTTATTGGATAAAAAATTATCTGCCTTAATTGGGTGTATTTTTTATGCACATTTTTAGAATTTTTACGCATCATCAGGCATCCACTTCCAAACGAAAGAGAACATGACAGCGTTTATTGTGTTTCGTCTGACGCTCTGAGACAAACTCATTTATGATGCGGGAAAAAAAGCCAGTTTAGAGTTTTATATTTTGCACCATGAATTTTTGTTGTGCATTGAGGGATTTATTCTATAAAACTATCGTAATTTATGTGCATGTCTTCTTATCGGATTAAAAAAATGATCTGCCTCAATTGAGCTCGTACTTTTTTTAGAATTCATGTGCATCTTGGCGTTTCCATCCAACAATTTTACATGCAATATCCCAAAATTCACATAAAAACTGGTCAATGGAAACATAGCTCATGACTGACTTCAGTGACTGTGAAAATCTGAACACACTTCACCTTACATAACATTCAGAAACTCTTGTATTCATACGCTGGCCATAGTCTTCAGAATCCACTCCACAAAGACGGACACCCGCGTGTAGATGCCGTAGACGTTGGCGCGTGCGCAGCCTTTCCCCCAGCTCACGATTCCTGTCAGAAACCATGTGTTTCTGTAGCGGGTGACCAGCGGCCCTCCGCTGTCCCCCTGACAGGAGTCACGGCCGCCCTCGATGAAGCCGGCGCACAGCATGTTCCTGGTCACCTTCAGACCCGAGTTCTCCCGACACTCCTCTAAGGAGACCCTCGGCACCTCCAGCTTCTGGAGAACCAGAGACGGCGGTCCCGACTGCGCCATGCGACCCCACCCGCTGACAGTGGACATGCGGATGGCTCCTATGGTGCGTCCGAACGTGCCGTTAGCAGGAGGAAGGCAGGCGGGAATGGCGAAGCGGTCGAGCGTGACGGGGCTGAGGAGACGCAGCAGTGCGATGTCACTGTCCGTGCTGGAGTGGTTGTACCGCGGGTGGATGAACACTTTAGACACTTCCCTCATCTGCTCTGTTCCTTCGTCTTTATCGAGGATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU467072 lncRNA upstream 30794 6206834 ~ 6207044 (+) True G406478
TU466733 lncRNA upstream 40164 6189779 ~ 6197674 (+) True G406162
TU467064 lncRNA upstream 54307 6183194 ~ 6183531 (+) True G406470
TU467055 lncRNA upstream 86716 6149599 ~ 6151122 (+) True G406461
TU467057 lncRNA upstream 101717 6135889 ~ 6136121 (+) True G406463
TU466743 lncRNA downstream 9900 6310408 ~ 6311699 (+) True G406172
TU467074 lncRNA downstream 22677 6323185 ~ 6323623 (+) True G406480
TU467088 lncRNA downstream 91572 6392080 ~ 6392356 (+) False G406494
TU467090 lncRNA downstream 91640 6392148 ~ 6392356 (+) True G406494
TU467131 lncRNA downstream 240754 6546125 ~ 6546203 (+) True G406532
CI01000299_06223295_06227054.mRNA mRNA upstream 10652 6222892 ~ 6227186 (+) True CI01000299_06223295_06227054
CI01000299_06217616_06220842.mRNA mRNA upstream 16767 6217616 ~ 6221071 (+) True CI01000299_06217616_06220842
CI01000299_06177821_06180061.mRNA mRNA upstream 57647 6177821 ~ 6180191 (+) True CI01000299_06177821_06180061
CI01000299_06116505_06128180.mRNA mRNA upstream 109388 6115638 ~ 6128450 (+) True CI01000299_06116505_06128180
CI01000299_06100005_06114087.mRNA mRNA upstream 123375 6099717 ~ 6114463 (+) True CI01000299_06100005_06114087
CI01000299_06312445_06318421.mRNA mRNA downstream 11532 6312040 ~ 6318421 (+) True CI01000299_06312445_06318421
CI01000299_06322253_06326504.mRNA mRNA downstream 21745 6322253 ~ 6326562 (+) True CI01000299_06322253_06326504
CI01000299_06396938_06400105.mRNA mRNA downstream 96430 6396938 ~ 6401342 (+) True CI01000299_06396938_06400105
CI01000299_06416707_06422267.mRNA mRNA downstream 116199 6416707 ~ 6422648 (+) True CI01000299_06416707_06422267
CI01000299_06424909_06425694.mRNA mRNA downstream 124303 6424811 ~ 6425733 (+) True CI01000299_06424909_06425694
TU466818 other upstream 864259 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 1309994 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1533213 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1731921 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1917697 4295533 ~ 4320141 (+) True G405842

Expression Profile