RNA id: trnap-ugg


Basic Information

Item Value
RNA id trnap-ugg
length 72
RNA type mRNA
GC content 0.54
exon number 1
gene id trnap-ugg
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3847888 ~ 3847959 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgctttgggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3359 lncRNA upstream 21662 3822517 ~ 3826226 (+) True LOC118965227
TU3353 lncRNA upstream 33683 3813916 ~ 3814205 (+) True G2585
TU3329 lncRNA upstream 67210 3780289 ~ 3780678 (+) True G2570
TU3318 lncRNA upstream 83291 3756223 ~ 3764597 (+) True G2559
TU3156 lncRNA upstream 175386 3650116 ~ 3672502 (+) True G2426
TU3842 lncRNA downstream 17042 3865001 ~ 3865275 (+) True G2958
TU3850 lncRNA downstream 19775 3867734 ~ 3871079 (+) False G2963
TU3848 lncRNA downstream 19906 3867865 ~ 3871079 (+) False G2963
TU3849 lncRNA downstream 19906 3867865 ~ 3870281 (+) True G2963
TU3862 lncRNA downstream 32936 3880895 ~ 3881979 (+) True G2971
trnap-cgg mRNA upstream 194 3847623 ~ 3847694 (+) True trnap-cgg
XR_005052490.1 mRNA upstream 22023 3823136 ~ 3825865 (+) False LOC118965227
XM_036981292.1 mRNA upstream 223306 3602663 ~ 3624582 (+) True bcl6aa
XM_036989274.1 mRNA upstream 447740 3399426 ~ 3400148 (+) True LOC118966170
XM_021615461.2 mRNA upstream 1267580 2538334 ~ 2580308 (+) True LOC110531937
XM_021616297.2 mRNA downstream 558 3848517 ~ 3853009 (+) True im:7152348
XM_036983882.1 mRNA downstream 1100768 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA downstream 1101432 4949391 ~ 4957086 (+) True agxta
XM_036984367.1 mRNA downstream 1816212 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA downstream 1816212 5664171 ~ 5767693 (+) False LOC110526525
TU3203 other upstream 344307 3503269 ~ 3503581 (+) True G2464
TU3048 other upstream 631654 3214697 ~ 3216234 (+) True G2343
TU2640 other upstream 1202719 2644335 ~ 2645169 (+) True G2016
TU1265 other upstream 1584323 2258883 ~ 2263565 (+) False G998
TU4120 other downstream 327364 4175323 ~ 4178073 (+) True G3176
TU4195 other downstream 550945 4398904 ~ 4399444 (+) True G3234
TU4331 other downstream 592007 4439966 ~ 4441908 (+) True G3351
TU4683 other downstream 1006562 4854521 ~ 4856248 (+) True G3596
TU4684 other downstream 1008566 4856525 ~ 4857065 (+) True G3597