Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000045 |
| length | 960 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 3 |
| gene id | XLOC_000021 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 513986 ~ 518076 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0008380 | RNA splicing | biological_process |
| GO:0046540 | U4/U6 x U5 tri-snRNP complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005682 | U5 snRNP | cellular_component |
| GO:0003674 | molecular_function | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-051030-63 | Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex; U5 snRNP; and spliceosomal complex. Orthologous to human TXNL4B (thioredoxin like 4B). |
| ensembl_id | ENSDART00000109083 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003003 | lncRNA | upstream | 155424 | 355481 ~ 358562 (+) | False | XLOC_000018 |
| TCONS_00003004 | lncRNA | upstream | 155424 | 355771 ~ 358562 (+) | True | XLOC_000018 |
| TCONS_00002804 | lncRNA | upstream | 272279 | 237391 ~ 241707 (+) | True | XLOC_000015 |
| TCONS_00002803 | lncRNA | upstream | 276563 | 236400 ~ 237423 (+) | False | XLOC_000015 |
| TCONS_00002802 | lncRNA | upstream | 278453 | 227253 ~ 235533 (+) | False | XLOC_000015 |
| TCONS_00000055 | lncRNA | downstream | 62615 | 580688 ~ 586501 (+) | True | XLOC_000023 |
| TCONS_00003005 | lncRNA | downstream | 276903 | 794976 ~ 898180 (+) | False | XLOC_000026 |
| TCONS_00003006 | lncRNA | downstream | 276903 | 794976 ~ 911551 (+) | True | XLOC_000026 |
| TCONS_00003007 | lncRNA | downstream | 497739 | 1015812 ~ 1033638 (+) | False | XLOC_000028 |
| TCONS_00002805 | lncRNA | downstream | 497751 | 1015824 ~ 1023334 (+) | True | XLOC_000028 |
| TCONS_00000041 | mRNA | upstream | 8366 | 494297 ~ 505620 (+) | False | XLOC_000020 |
| TCONS_00000044 | mRNA | upstream | 8369 | 496268 ~ 505617 (+) | True | XLOC_000020 |
| TCONS_00000042 | mRNA | upstream | 16965 | 494341 ~ 497021 (+) | False | XLOC_000020 |
| TCONS_00000043 | mRNA | upstream | 17128 | 494873 ~ 496858 (+) | False | XLOC_000020 |
| TCONS_00000040 | mRNA | upstream | 70227 | 418869 ~ 443759 (+) | True | XLOC_000019 |
| TCONS_00000048 | mRNA | downstream | 6315 | 524388 ~ 530935 (+) | False | XLOC_000022 |
| TCONS_00000049 | mRNA | downstream | 6748 | 524821 ~ 532429 (+) | True | XLOC_000022 |
| TCONS_00000050 | mRNA | downstream | 14693 | 532766 ~ 549521 (+) | False | XLOC_000023 |
| TCONS_00000051 | mRNA | downstream | 14734 | 532807 ~ 591328 (+) | False | XLOC_000023 |
| TCONS_00000054 | mRNA | downstream | 62569 | 580642 ~ 591331 (+) | False | XLOC_000023 |
| TCONS_00000036 | other | upstream | 220092 | 260040 ~ 293894 (+) | False | XLOC_000017 |
| TCONS_00000003 | other | upstream | 500729 | 12129 ~ 13257 (+) | False | XLOC_000001 |
| TCONS_00000052 | other | downstream | 19516 | 537589 ~ 546217 (+) | False | XLOC_000023 |
| TCONS_00000053 | other | downstream | 58371 | 576444 ~ 576521 (+) | True | XLOC_000024 |
| TCONS_00000060 | other | downstream | 700618 | 1218691 ~ 1218805 (+) | True | XLOC_000029 |
| TCONS_00000061 | other | downstream | 1057410 | 1575483 ~ 1575563 (+) | True | XLOC_000032 |
| TCONS_00000067 | other | downstream | 1194080 | 1712153 ~ 1718527 (+) | False | XLOC_000036 |
