RNA id: TCONS_00072728


Basic Information

Item Value
RNA id TCONS_00072728
length 1710
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_036945
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 7456076 ~ 7499416 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCATGTTATGTCCAAGTTTAAAAAGCTAACACTGAATGGGGCGCTTCATTCACGGAGGCCCCTTTGTGCGCCTCCCCCCGCTCTCGGCGAATGGTTCACTCCGAAGACACGGAGCATGTGAatcaaaatgaaaacactgaGTGCCATCAGATACACACTAGGAAGAAAGGAAAACCGGAGGGATGCGAAAAAGCCAGGGTTATCATGATATCGAATCAATATGAAAGCATCTGGACCCGTTTTAACCATTTAAGTGAACCGGTTTCACGCTGTAGGCTCAACATCGTGACACACTAACGTTAGTTGTCTTGTTATTAGATCACAGACTGGATTCTGAATGCTTCGGAATGAGGGAAAACATTGTCACAAAAGGATGCTAAAACTGAATTATCAGTGCTTGCTGTAAGCAAATAAACCCTCTGCTGTCGAGCTGTCACGGCGGAAAATTGTAGTGGATGGAAACCTTCTCTGCGCCTTCTACCTTCCACATGACCCCATTCTCCCTGTTTGCTTGGCTTCCCTAAAGATACGTAGTGCTCTCTAACACACAAGACAGCATGACGTCCCCTGCCCAGTTTCTGGCCTTTAAGCTCTCGCTGCCATCTAATGACGGGAGTCCGGAGCGTCTGTTCAGCTGCGACGAGGACATTGAACGGCGCTATGAGGTGGTCCCGTCTGTCGTCTGCTCCATGTGCTGCCTGTTTGGCATCATCTACTGCTTCTTCGGGTACCGTTGCTTTAAGGCTGTAATGTTCCTCACGGGTCTGATGTTTGGctccatcatcatcttcatgcTCTGCTATAAGGAGCGGGTCATGGATACTCAGCTAAGTGTGGAGGCCAGTGTGGGCATCGGCCTGGGAATTGGCACATTGTGCGGTCTAGTCACAATGCTAGTCCGCAGCGTGGGGCTTTTTATGGTTGGACTTCTTCTGGGTTTGCTAGTGGCCCTGGCCTCTCTGGTGGTTCTGGAGGAGTTTTACCACCCGAGGACAGTGTGGCTTCCCCTGGGCGTGCTGCTGGGCTCGGGCATGCTGTTTGCGGTGCTCACTCTACAGTGGCAGCGCTGTTTCACCACCATCTCCACCGCCGTCTTTGGATCCGCCGTGGTGACTGTGACTGTGGATTATTTCGTGGAGCTCTTTGCTCTGACCCGCTACATCTACGAGAGGGTGAAGGTGGATCCACCTCGACAAGTATGTTGGTTCACATGGGTGGTCATGGGAGTTTGGCCTGTGCTGGCGCTGCTGGGTGTTCTTATTCAGTGGAAGGTCACGGCTGAAGGATATTCTCACACTGAAGTCTTCATCAATCACCAGCAGAGACGAGTGCAGCTAATGCGAATCCGTCAAAAAGAGGAGCGCAGGGAATGccgaaagaaaaagaagaaaaagccaCAGAAACAGCCGCCACAGCAACAGCAACAGAAGTACCACCACCCCCCTCAGACCAATCCTCACCCCCCAAATCCTCCACCAAAAGTCCAGCATCCCGAGCCAACCCACCGCCGGAAGCCCAACACCATCCGCCGCTTCGATGGAGATGTACTTTCTCCGAGTTACATCCAGAACTTCCGTGACAGACGTGCCGACAGAAGGGGATACTCTCATGGGCGCTTGATTGGCGGCTCACACGTTGTCGATTTGGACTATGACTACGGCTCCCAAGTGCCCCTAACAGCCCACACAGGCCCTGTGGTGAGAGGTTGA

Function

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-716 Predicted to be involved in positive regulation of canonical Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic vesicle and plasma membrane. Orthologous to human TMEM198 (transmembrane protein 198).

Ensembl:

ensembl_id ENSDART00000125824

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074883 lncRNA upstream 233566 7215950 ~ 7222510 (+) True XLOC_036943
TCONS_00074881 lncRNA upstream 739792 6713947 ~ 6716284 (+) False XLOC_036935
TCONS_00074882 lncRNA upstream 740028 6714393 ~ 6716048 (+) True XLOC_036935
TCONS_00075063 lncRNA upstream 776393 6662846 ~ 6679683 (+) False XLOC_036934
TCONS_00072732 lncRNA downstream 108187 7607603 ~ 7619620 (+) True XLOC_036946
TCONS_00074884 lncRNA downstream 273930 7773346 ~ 7774982 (+) True XLOC_036950
TCONS_00075065 lncRNA downstream 661042 8160458 ~ 8163852 (+) True XLOC_036953
TCONS_00074885 lncRNA downstream 854382 8353798 ~ 8354067 (+) True XLOC_036954
TCONS_00072752 lncRNA downstream 891624 8391040 ~ 8392517 (+) True XLOC_036958
TCONS_00072727 mRNA upstream 88798 7358749 ~ 7367278 (+) True XLOC_036944
TCONS_00072724 mRNA upstream 367306 7068832 ~ 7088770 (+) True XLOC_036941
TCONS_00072725 mRNA upstream 374519 7072504 ~ 7081557 (+) False XLOC_036942
TCONS_00072726 mRNA upstream 375220 7072529 ~ 7080856 (+) True XLOC_036942
TCONS_00072723 mRNA upstream 387818 7030016 ~ 7068258 (+) True XLOC_036940
TCONS_00072731 mRNA downstream 49117 7548533 ~ 7619622 (+) False XLOC_036946
TCONS_00072734 mRNA downstream 224736 7724152 ~ 7728223 (+) True XLOC_036948
TCONS_00072735 mRNA downstream 233298 7732714 ~ 7767156 (+) True XLOC_036949
TCONS_00072736 mRNA downstream 410074 7909490 ~ 7995811 (+) False XLOC_036951
TCONS_00072737 mRNA downstream 410074 7909490 ~ 8024196 (+) False XLOC_036951
TCONS_00072717 other upstream 498703 6957256 ~ 6957373 (+) True XLOC_036939
TCONS_00072714 other upstream 606972 6848989 ~ 6849104 (+) True XLOC_036937
TCONS_00072708 other upstream 1025546 6430416 ~ 6430530 (+) True XLOC_036932
TCONS_00072707 other upstream 1054282 6401679 ~ 6401794 (+) True XLOC_036931
TCONS_00072704 other upstream 1271727 6184235 ~ 6184349 (+) True XLOC_036929
TCONS_00072733 other downstream 112960 7612376 ~ 7612526 (+) True XLOC_036947
TCONS_00072739 other downstream 579216 8078632 ~ 8078755 (+) True XLOC_036952
TCONS_00072746 other downstream 881314 8380730 ~ 8385896 (+) True XLOC_036957
TCONS_00072760 other downstream 908682 8408098 ~ 8412072 (+) True XLOC_036961
TCONS_00072781 other downstream 1469549 8968965 ~ 8971932 (+) True XLOC_036968

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_01754374_01762948.mRNA True 2468 mRNA 0.44 5 CI01000037 1754082 ~ 1763933 (-)
bowfin (Amia calva) AMCG00001297 True 1155 mRNA 0.61 4 CM030137.1 24072429 ~ 24090849 (+)