RNA id: XM_026914974.2


Basic Information

Item Value
RNA id XM_026914974.2
length 1518
RNA type mRNA
GC content 0.41
exon number 7
gene id commd10
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14940301 ~ 14982884 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATGGCTCCTTGATGTCTACATAGGTGCACTACGTAGGGTATGAAATAACGGCtctttatgtagtgcactatatatatCCAAAAGAGAGGTATTTGGGATCTGACTTATGGTTCCTAGTTAGCCAGATGAAAGACTGATGGTTAATATAAAGATTGATGAAACACTAGCATGGCTTTAATTGTCAAAGAAACACAGAGCATCAGAGACGCAGTAGCCTTCATCAACTCTATAGAGGTCAATAAGCTGTCCAGACTTCTCTCTCGCATTCTTCAGAAACTTCATCTTAAGGGCGAGCGCTCCTTCAGTGAAGATGAAGAGCAGAAACTACAGACTGCTTTAGCTTTAGAGAAACAAGCCCTTCACCTGGTGCTGGAGACTTCCTCATTCTTATTAGAACAGGCTGTGTATCACAATATTAAACCAGCATCTCTGAAGCAGCAGCTTGAAAACATCCACATTGCTCCAGACAAAGCTGAGGCATTTAGTCAGGCTTGGGCTACAGCTGGCCCAGAAGTGGTAGAGAAGATTAGACAGACAATATTTGCCCCCAAGAAGCTGGAGCATATAGGCTGGCAGCTCAACCTTCAGATGGGCCAGTCATCACAGGCTAAGCAAAAAGAGCCACACGCTGTGCTGGACCTGGGAGTCAGAGAGGAGGATGAGTCGGAGCATCTACAGAAGGTTCATATGGAATTCAGCCACCAGGAACTGTTGGAGTTCTACAACAAGctAGAGATGATTCAAGCCCAGCTGGATTCCCTGACTTGATGCTGATGGGACAGTTCATAAGGGCAAGTGTGCAGTGTATCAGCCACATTTCCCTTGAGTCCAGGGTCCAGGAGTCTTGTCAGGAAGGATTGGTGTCCTCAGTTTGttaatttctgtttaattaCCGCATCATGGTCTAAAAGTCTGTGTCTAATTTGTCATTTGTGTACCTTGCCTTTTGTGTGAGTCAGATATCGTGACTGAGAATTAACTCAAAGCACAAATGTCGTTCTTATTGTACACAgtacaaagttattgttattataaataCTGTCCCTACTGGTTGGATTATCTAATTTTGTTGTATATGTGGGTGAAGAAAATgaaatcaggaagaaaaaaaactaggaAGAAAGTAGTTGTTTATCATAAGCTCCCTCTCAATACATCTAGCCAGAGGTTTCAACATTtaaaagtgtgagtgtgaagtcACACTCTTGATCAGTTACTAAGTGTACTCAAGGGCCTGTGTCAGATGGCTTTACAGATTTAACTTTCATAAATCTGTCATAAAATGTGGCAGTGCATTCAACATGTGCTAATTGAGATGTCTTGAAACAAATGTGCACTGAAATTAATATGAAACAGAAGACTGGTCCTAAAATAACGAGAGATATTCTATGATACCTTATACCttatattttcatacatttctgTGCTGATCTAAACGTTCATTCAATTTGTAATGGAATTGCTAACTGTGGTGTATAGctaataaatgtgtaatgatCCCCTGCCATGAAAGGTCA

Function

GO: NA

KEGG:

id description
K22566 COMMD10; COMM domain containing 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157035 lncRNA upstream 115939 14821982 ~ 14824363 (+) True G132968
TU157022 lncRNA upstream 196156 14742482 ~ 14744146 (+) True G132959
XR_003403098.2 lncRNA upstream 199340 14722430 ~ 14740962 (+) True LOC113529916
XR_004578523.1 lncRNA upstream 456566 14474642 ~ 14483736 (+) True LOC117597773
TU156653 lncRNA upstream 612433 14327652 ~ 14327869 (+) True G132603
TU157332 lncRNA downstream 226631 15209515 ~ 15209846 (+) True G133220
TU157377 lncRNA downstream 316300 15299184 ~ 15299387 (+) True G133260
TU157435 lncRNA downstream 360870 15343754 ~ 15344031 (+) True G133306
TU157456 lncRNA downstream 371577 15354461 ~ 15363971 (+) True G133307
TU157467 lncRNA downstream 396078 15378962 ~ 15384824 (+) True srp19
XM_026924161.2 mRNA upstream 2858 14921143 ~ 14937444 (+) True ap3s1
XM_026924171.2 mRNA upstream 3337 14921143 ~ 14936965 (+) False ap3s1
XM_026924381.2 mRNA upstream 661021 14272988 ~ 14279281 (+) True prf1.5
XM_026924399.2 mRNA upstream 661021 14272988 ~ 14279281 (+) False prf1.5
XM_026924390.2 mRNA upstream 661022 14272988 ~ 14279280 (+) False prf1.5
XM_026918352.2 mRNA downstream 94786 15077670 ~ 15112818 (+) True dmxl1
XM_034306823.1 mRNA downstream 152802 15135686 ~ 15147422 (+) True prr16
XM_026926927.2 mRNA downstream 152802 15135686 ~ 15147422 (+) False prr16
XM_034306381.1 mRNA downstream 173955 15156839 ~ 15163360 (+) True LOC113532232
XM_026929214.2 mRNA downstream 182761 15165645 ~ 15174722 (+) True sncaip
TU156645 other upstream 616852 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 1232752 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 1570683 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 1876180 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 1878294 13061936 ~ 13062008 (+) True trnav-cac_9
TU157849 other downstream 1019177 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 1019177 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 1419864 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 1597373 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 1597569 16580453 ~ 16594403 (+) False mtmr3

Expression Profile