RNA id: TU86630


Basic Information

Item Value
RNA id TU86630
length 1158
RNA type TUCP
GC content 0.42
exon number 5
gene id AMCG00014328
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9305239 ~ 9317167 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCGACTTCCTAAAACACCACCGTCTCTCCCGTGATGCTAGTCTGTACTGCCTCCTGTCAGTAGGAGGGAGCGTAAAGGACAATATAAAGGGCTTACACTGGAAGGTCGAAAGTAGGGCATCAGCTGGGGGAAAATAAGCCATAGATAGGGACCATTGTTGTGTGATTGTTATTTGCCTTAGGTCTCTACTACAGTACCAGTAAGGTTGCTCTACCCTCCATAGTGCTCTTCAGTCTAGTGGCTTTTTTCGTTCACTTCAGTACCAGAAATGGCTGCGATCGGGCTCCGAGCTTCCTACCACAGGATGCTGGACAAAATCGAGCATATTTTGCCGGCTAAACTGAGACCCATTTACAACCATCCAGCAGGGCCAAAAACAGTTTTCTTCTGGGCACCAGTATTTAAATGGGGTTTGGTAGCTGCTGGCCTGGCAGATATGACCCGACCTGCAGAAAAACTCAGTACCTCTCAGTCCTGCGTACTGACAGCCACAgGTTTAATATGGTCCAGATATTCTTTGGTGATTATTCCCAAAAACTGGAACCTCTTTGCTGTTAACTTCTTTGTAGGTTGTGCTGGCAGCTCTCAGCTCTACCGAATCTGGAAGTACAAACAGGAACTCAAAGCTAAGGAGAAGGAACAGGCAGCGCTACAGTCTTGAGACTGAATCCAGGCAATCCGATCCCATAGACTCAAAGGGAACCCTCCAGTGGGTTTACTGTCTCCTGCTTCTAAATTATAATCGTCCCGTGCCTTTCTTGTTAAGAGAAAAGCAGCCGAAAAAAGATTTTTATTATCTAGCTTTAAAATGGAGATCATTTAACTTATCAGGGTTGAAGAAATTGCCGGTGTcacatttaaacttttaaaacactTGCATAACGGTACACTCGCAACgcacaaatgaaacaaaactaaatagcaatgtatttaaaatgactaTTTCGAGACATTTATTTGTATCGCTGCTTATTCCTGACATAAAAATATcctttttgttaatatttgtcAGAGTAATCTGAGTAGAAGTTTAATGTTTGTATGTGGTggtgttgctttgtttttagttacatcatcaccctatttttttctattaattaatgCCTGGTATTGTCTTGAACACTGTATAAGGAATGTCTCCCAATAAATTTTAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86513 lncRNA downstream 311825 8998426 ~ 8998626 (-) True G69250
TU86493 lncRNA downstream 419612 8890556 ~ 8890839 (-) True G69233
TU86331 lncRNA downstream 1059890 8226494 ~ 8250561 (-) True G69086
TU86291 lncRNA downstream 1174257 8134903 ~ 8136194 (-) True AMCG00014297
TU86202 lncRNA downstream 1436093 7874153 ~ 7874358 (-) True G68981
TU86641 lncRNA upstream 32621 9349788 ~ 9355238 (-) True G69352
TU86667 lncRNA upstream 272657 9589824 ~ 9590081 (-) True G69372
TU86668 lncRNA upstream 274009 9591176 ~ 9591381 (-) True G69373
TU86677 lncRNA upstream 577559 9894726 ~ 9895580 (-) True G69382
TU86687 lncRNA upstream 584190 9901357 ~ 9912021 (-) True G69391
AMCG00014325 mRNA downstream 81824 9216869 ~ 9228627 (-) True AMCG00014325
AMCG00014326 mRNA downstream 163114 9144538 ~ 9147337 (-) True AMCG00014326
AMCG00014318 mRNA downstream 175064 9131415 ~ 9135387 (-) True AMCG00014318
AMCG00014320 mRNA downstream 225238 9061033 ~ 9085213 (-) True AMCG00014320
AMCG00014319 mRNA downstream 259809 9047304 ~ 9050642 (-) True AMCG00014319
AMCG00014331 mRNA upstream 41680 9358847 ~ 9367036 (-) True AMCG00014331
AMCG00014333 mRNA upstream 56289 9373456 ~ 9418236 (-) True AMCG00014333
AMCG00014332 mRNA upstream 150157 9467324 ~ 9472259 (-) True AMCG00014332
AMCG00014340 mRNA upstream 683967 10001134 ~ 10017444 (-) True AMCG00014340
AMCG00014341 mRNA upstream 710485 10027652 ~ 10043566 (-) True AMCG00014341
TU86412 other downstream 926227 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 1151861 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 1171325 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 1887160 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 1929671 7378088 ~ 7380780 (-) True AMCG00014271
TU86854 other upstream 1479549 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 2342854 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 19012572 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 20072123 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 22946000 32263167 ~ 32263427 (-) True G73047

Expression Profile