RNA id: AMCG00014649


Basic Information

Item Value
RNA id AMCG00014649
length 687
RNA type mRNA
GC content 0.60
exon number 1
gene id AMCG00014649
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25373386 ~ 25374072 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGAGAGACCCCGTGTCACGGTACATCAGCGAGTGGAAGCATGTCCAGAGAGGTGCGACCTGGAAGACCTCCTTGCACATGTGTGACGGCCGCTCCCCCACCCAGGACGAGCTCCCCACCTGCTACGTAGGGGACGACTGGTCTGGGGTGACCTTGCTGGAGTTCATGGACTGCACCTACAACCTGGCCAACAACCGACAAGTGCGCATGCTGGCGGACCTCAGCCTGGTGGGCTGCTACAACCTGTCGTCCATGAACGAGAGCGAGCGCAACGACATCCTCCTGCACAGCGCCATGAACAACCTCAAGCACATGGCCTTCTATGGGCTGACGGAGTACCAGCGCAAGACGCAGTACCTCTTCGAGAGGACATTCAACCTGAAGTTCATCTCGCCCTTCACCCAGATCAACAGCACCCGCGCCGCCAACGTGGACATCGACGAGGTAACGCGGCAACGCATCGAGGAGCTGAACTTCCTGGACGTGCAGCTGTACGAGTACGCCAAAGACCTCTTCCTGCAGCGCTTCCAGTTCACCCGCCAGAGGGAGCACCAGGAGGAGAGGCAGAAACGGCGGGAGGAGAGACGGCTTCTCCGAGAACAGAAAGCCTACCTGTCCAAACAGCAGGACGACGAGGAGGAGGCCACCACAGAGGACTACACCAGTCAAGTGGCCAGATGGTGA

Function

GO: NA

KEGG:

id description
K08103 HS6ST3; heparan sulfate 6-O-sulfotransferase HS6ST3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89593 lncRNA upstream 264008 25109156 ~ 25109378 (+) True G71670
TU89583 lncRNA upstream 290508 25082659 ~ 25082878 (+) True G71662
TU89508 lncRNA upstream 840425 24523645 ~ 24532961 (+) True G71598
TU89505 lncRNA upstream 1040089 24332431 ~ 24333297 (+) True G71596
TU89493 lncRNA upstream 1464737 23908385 ~ 23908649 (+) True G71584
TU89672 lncRNA downstream 159270 25533342 ~ 25534154 (+) True G71725
TU89720 lncRNA downstream 331386 25705458 ~ 25762742 (+) True G71763
TU89729 lncRNA downstream 371731 25745803 ~ 25748408 (+) True G71772
TU89742 lncRNA downstream 396137 25770209 ~ 25770489 (+) True G71784
TU89783 lncRNA downstream 578161 25952233 ~ 25959702 (+) True G71817
AMCG00014648 mRNA upstream 127425 25245413 ~ 25245961 (+) True AMCG00014648
AMCG00014644 mRNA upstream 209751 25149803 ~ 25163635 (+) True AMCG00014644
AMCG00014646 mRNA upstream 247341 25124094 ~ 25126045 (+) True AMCG00014646
AMCG00014643 mRNA upstream 270748 25087014 ~ 25102638 (+) True AMCG00014643
AMCG00014637 mRNA upstream 435421 24928031 ~ 24937965 (+) True AMCG00014637
AMCG00014651 mRNA downstream 105719 25479791 ~ 25505003 (+) True AMCG00014651
AMCG00014653 mRNA downstream 148154 25522226 ~ 25530849 (+) True AMCG00014653
AMCG00014652 mRNA downstream 191085 25565157 ~ 25574008 (+) True AMCG00014652
AMCG00014654 mRNA downstream 201168 25575240 ~ 25592567 (+) True AMCG00014654
AMCG00014657 mRNA downstream 234916 25608988 ~ 25630854 (+) True AMCG00014657
TU89430 other upstream 2517740 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 7099026 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 7924933 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 8904273 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 9240584 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 2461431 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 2494631 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 2928301 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 4477378 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 5390279 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000024_05073385_05109362.mRNA True 1269 mRNA 0.57 2 CI01000024 5073385 ~ 5109362 (+)