RNA id: AMCG00014745


Basic Information

Item Value
RNA id AMCG00014745
length 2639
RNA type mRNA
GC content 0.40
exon number 5
gene id AMCG00014745
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29643776 ~ 29649810 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAGGCCTGACGCACCCGATTCATGGTCCTTGTAAACCGTTTGTTTGGCAAGcaaaaatatacagatacacGTATAGAAACTGCCGATTGTAATGTTGAGACCTGAGATTAAACTAATAACTAAacgtttatttaaaatgcattttaaaaggggTTTAGCCTCTATCCACgattgaatattaatattaggcTAGTAGTAATAACAAACCCTCTAATCCTATATAGTTTTTCAGTAACAGTTGCTTCTTTCCTATGTGTTCGCTTTCTtgattaattttaacatttggaCTATTTGTTTCTGAATACAAATCGGATTCAAACGAAAAAAGCTCAGACGAATGAAAAATGTCTTCATTTGCAAATGACAGTGTGACTCCAGGGAGACAGTCATGTTAAAACATCGTCACCAGTCCTAGGTATAAGTCTAGATAGTTAACATAAGGCACTTAACAAGGTAAAgtcgttttattttatttgatatagcCAAcctattgaaaaaaaataaaaaaaatctccgCCACCAAATTTATATCTGATTGACGTAATCATCAGCGAATCCTAGGGGGACTTCAGAGACGTTTAACAATATCCGGCGCCTTCTTATGACGTCTTTGCAGGTCCATACGCAGGGATTCAAACCATCGCAGTTGTCAAAGCCTGAGTTCAGATCTGGCAAGGAAGGAATTTCTCTTGGAATCATGGCGGGCAGTCAGTCAATGGAAATCCTCAGCAAGGTCTTGGAGAACCAGATGATGGAGACGGCCAAGATGGTGGAGGAACAGCTGGACTCTGAGCTGTGCAAGTTGGAAAAGATGGACGATGACGAGTTGGAGAAGCTGAAGGAGAGGCGGCTGGAGGCACTCAAGAAGGCCCAAAAGCAGAAGCAGGAATGGCTGTCTAAGGGACATGGTGAGTACATGGAGATCCCAAGTGAGAAAGATTTCTTCCAGGAAGTGAAAGACAGTAAGAATGTGGTCTGCCATTTCTACAAAGACTCCACCTTCAGATGCAAAATTATGGACAAGCACCTAACCATATTGGCCAAGAAACACCTGGAGACGAAGTTCATTAAGCTGAACGTAGAGAAGGCTCCATTCCTCACCGAGAGACTGCGCGTCAAAGTCATCCCCACGCTGGCGCTGGTGAAGGACGGCAAGACCAAAGATTACGTGGTCGGCTTCACTGATCTGGGGAACACGGATGAGTTCACGACGGAAATCTTAGAATGGCGTTTGGGCTGCTCAGAAATCATTAACTACAGTGGAAATTTGATGGAGCCTCCCATTCAGGGACAGAAGCCCAAGTCAAAGTTCACGAAGGTAGAGAAGAAGACAATACGGGGTAGAGGGTATGAATCCGACTCTGACGATGACAACTAGACTGCAATGGCTTCCTGTCCTCCAAGGCtccacaccccctccccccacctctctctcactTGTGCTTCATAGTCCTCATTCTCAATATCTGTGGCGTTCCATATACGCCATCCGGTTTCCTTTTCAAACCAtctttgttttgtctgcagTCTTTTGGATCTGTATTCAATGATTTCTTTCCAATTCCATGGACTTAAccttcaatatatattttgatgttgtaccagattaaatgtttaaaatgtaacatctcagttttcaatgtttttttgtgttgacaTCATAgactgtatgttttttgtttaatcttttccCCATGTTTGAGGTTTTATAACTCATAAAAGGGAGAGTGTTCTTTCTTTGATCAATTGGTACAGAAACCCTAGAAGTACCAGGGAAACGATCTTGTGTAATATATAAGAAactgactttatttttttgccttaaTTTGGAATCCTCCCTAATCCAATATCCTGGTGACCTACTGCCCTGACACCTGTGTAGATCATCTTTAAGTTAATGAGATGCTGAGCTACTGAACTGTATCTTTTCCTGATTGGGCAGAGCATATGGTGTATGTTGATGGCAAGGAGAGGAGACCAGATTGGCTATTTCTTCAGGAGCCAGATTTAAGCAAGAGTGCTCAGCTCAGTCTCTGACAAATTCTAAAGTATCCATGGCTGATCTCAAAACTGTATAATGAGTATTGTGCCATTTTGAAAACAAGTTGTTTTGGAAAATCAATTTTCCTTGGCAAAAACACCAGCTTGCTCTACTGCCCACTGGTTTCTGCAATCCatggagaaacaaaacattgaattaaGTTGCCCTTAGTTTTAAGTTTTCTACCAGTTGTTTTCTTGTAACTAATTTTAAATCTATTGCACATGACCAAATGCAAACACTCATAATAATCTGCTTTTTGTCGTATTAATATTAAGAGCTGCTGCTCTTCAGCTGGTTATTAGTAGCAAACAAGTGCCAAGGGTGCCACCAGCATAGtgcaatctttaaaaataaaatagaaaaatcccCCTTCCAACTTGGATTTCAGCATAAGGGTTCAGTTTTAGATTGGTGtgtactttaatttaataaagcataTTTCAGTCAGTGAGCTGCacatgtgttgtttgtgtgacATAAAGCATCCCAATATGAACTATACCTGGGTGAGGTTGATCAAAATGAACAGCTTCTAAattaatttccctcattaataATTTGGttcaatatttgtttccatttgaacAAGTCCC

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90544 lncRNA upstream 371258 29268329 ~ 29272518 (+) False AMCG00014738
TU90543 lncRNA upstream 371258 29270851 ~ 29272518 (+) False AMCG00014738
TU90536 lncRNA upstream 391071 29249246 ~ 29252705 (+) True AMCG00014739
TU90518 lncRNA upstream 451498 29191971 ~ 29192278 (+) True G72426
TU90507 lncRNA upstream 483351 29157025 ~ 29160425 (+) True G72415
TU90738 lncRNA downstream 193657 29843467 ~ 29846586 (+) True AMCG00014757
TU90938 lncRNA downstream 1187026 30836836 ~ 30837169 (+) True G72767
TU90940 lncRNA downstream 1191750 30841560 ~ 30844670 (+) True G72768
TU90941 lncRNA downstream 1196352 30846162 ~ 30846421 (+) True G72769
TU90963 lncRNA downstream 1306095 30955905 ~ 30956284 (+) True G72783
AMCG00014746 mRNA upstream 29739 29588801 ~ 29614037 (+) True AMCG00014746
AMCG00014743 mRNA upstream 85075 29540531 ~ 29558701 (+) True AMCG00014743
AMCG00014736 mRNA upstream 206669 29431521 ~ 29437107 (+) True AMCG00014736
AMCG00014740 mRNA upstream 222397 29400632 ~ 29421379 (+) True AMCG00014740
AMCG00014741 mRNA upstream 245555 29383488 ~ 29398221 (+) True AMCG00014741
AMCG00014747 mRNA downstream 3383 29653193 ~ 29657089 (+) True AMCG00014747
AMCG00014753 mRNA downstream 9734 29659544 ~ 29684659 (+) True AMCG00014753
AMCG00014752 mRNA downstream 58595 29708405 ~ 29733622 (+) True AMCG00014752
AMCG00014751 mRNA downstream 86081 29735891 ~ 29739643 (+) True AMCG00014751
AMCG00014754 mRNA downstream 137916 29787726 ~ 29829991 (+) True AMCG00014754
TU90214 other upstream 1339703 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 1763976 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 1801905 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 6788130 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 11369416 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 201640 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 1114541 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 1328406 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 1329760 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 1340253 30990063 ~ 30996363 (+) True G72787

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073014 False 817 mRNA 0.47 5 NC_007120.7 21819742 ~ 21824190 (+)