RNA id: TU91363


Basic Information

Item Value
RNA id TU91363
length 1832
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G73117
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 32569671 ~ 32574686 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAAAAGGTAGCCGGTACTGATGGACAGCATGTGTCGAGTAATATGTTACAATAATAAgtgcatttcagattaaaaaacaaactccttGCCGATTTCAGCCGTTTCTCTTCCGCTTCCTCCTGCTCCAGAATCCCTTCTCATGAGTGATGTCATTTCCGTTGTGagaattgttgtgtgtgttgtggaaattattttttgtgctctcaaaatatttttcttgttttttgcacttcagggccaccgaaATGAGTAGGTGCCGGCCTTCTTCTTCGAACAGTAGAGATCAGCCAAATGATAATGCCCCAGATGCCAGCACACCTCTTGCAGTCCTGTCAGCCTCACAGGAAATGCAGCCTCTTGAGGGAGGGAGTTCAGGAAGTGCAGGCCAGATCCAGGAATAGCCCCTTTGACCTTGTGGACAAGGTTACAGCAGCTGGCCTGAACTTCAGAGGATACTGTTGCTTACATTATCATTACATGAGTAATGATAGATTGTGTATGCAACCACAATTATCTGAAACAGAAAGCAAtgcccaaagggggatgggttAGCCAGTTCACATGGATAccttattgaaatatttttcatatttcatttttcatggaTAAGCAAGAACTTTAAACCTGGTCCATCCAGGCATTCGGCGATTCCAGTGCTGTGTCATGCACATGCCTGTGTGCACTGGGGCCTCTGTGACCCTTGGTGTGGGGGGCTGTTGGCAGGGAGGGCGCTGCTGGCTCAACAACAAGTGGAACTCAGGGCCATGGAGAGCCAAGAGTCACTGGCAGAGGGAACCGGAAGCGCAGCTGAAAGCGTGTGCAGAACATGCGTGACTAATAGAGGGCTGCTCTAATGCTGTCTCAGACCTGCCAactttgaaatatgaaaaataataaggcACACTTCAGAGATTAAGGAATGTCAGGAAATTTAACAatgaactaaaaataatataacctCACTATATActataactatttatttattacatgatAGAGGTACATTGTGCTTGATCAAAAAGTTTGTGAACAAGACTTCAGCCCTGATAGCTCCAAGATAATCACCTCGACTGATGACATTTTCAAGTTTCGAGCAGGTAGACACAGTAGCAGCCTTGTTCTCATACTTCTtggtacatacagtgagggaaaaaaagtatttgatcccctgctgattttgtacgtttgtccactgacaaagaaatgatcagtctataattgtaatggtaggtgtattttaacagtgagagacagaataacaagaaaaaaaatagaaaaatgcatttcaaaaaagttataaattgatttgcatgttaatgagggaaataagtatttgatcccctatcaatcagcaagatttctggctcccaggtgtcttttatacaggtaactgtataaaagacacctatccacagaagcaatcaatcaatcagattccaaactctccaccatgtccaaggatgtcagggacaagattgtagacctacacaaggctggaatgggctacaagaccatagccaagcagcttggtgagaaggtgacaacagctggtgtgattattcgcaaatggaaggaacacaaaataattgtcaGTCTCCCTTGGTCTTGGGGCTCCATGAAAGATCTCACCTcttggagtttcaatgatcatgagaacagtgaggaatcagcccagaactacacgggaggatcttgttaattatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaataCACTACGCTGTTAAGGACTGAAATCCTTCAGcacccgcaaggtccccctgctcaagaaagcacatgtacagacCCGTCTGAA

Function

GO:

id name namespace
GO:0006401 RNA catabolic process biological_process
GO:0006402 mRNA catabolic process biological_process
GO:0000956 nuclear-transcribed mRNA catabolic process biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91353 lncRNA downstream 13726 32455306 ~ 32555945 (-) False AMCG00014816
TU91358 lncRNA downstream 45869 32523238 ~ 32523802 (-) True G73112
TU91351 lncRNA downstream 103255 32450422 ~ 32466416 (-) True G73106
TU91322 lncRNA downstream 138720 32430597 ~ 32430951 (-) True G73082
TU91304 lncRNA downstream 207278 32357702 ~ 32362393 (-) True G73066
TU91379 lncRNA upstream 53843 32628529 ~ 32630521 (-) True G73132
TU91436 lncRNA upstream 133327 32708013 ~ 32708283 (-) True G73181
TU91437 lncRNA upstream 135158 32709844 ~ 32710115 (-) True G73182
TU91438 lncRNA upstream 136111 32710797 ~ 32711045 (-) True G73183
TU91439 lncRNA upstream 136561 32711247 ~ 32711703 (-) True G73184
AMCG00014816 mRNA downstream 14138 32502317 ~ 32555533 (-) True AMCG00014816
AMCG00014814 mRNA downstream 246912 32321974 ~ 32322759 (-) True AMCG00014814
AMCG00014813 mRNA downstream 283735 32270685 ~ 32285936 (-) True AMCG00014813
AMCG00014809 mRNA downstream 600448 31967444 ~ 31969223 (-) True AMCG00014809
AMCG00014806 mRNA downstream 779934 31769573 ~ 31789737 (-) True AMCG00014806
AMCG00014820 mRNA upstream 54146 32628832 ~ 32641932 (-) True AMCG00014820
AMCG00014819 mRNA upstream 72848 32647534 ~ 32648995 (-) True AMCG00014819
AMCG00014818 mRNA upstream 75490 32650176 ~ 32653420 (-) True AMCG00014818
AMCG00014823 mRNA upstream 217195 32791881 ~ 32793425 (-) True AMCG00014823
AMCG00014824 mRNA upstream 220319 32795005 ~ 32806293 (-) False AMCG00014824
TU91283 other downstream 306244 32263167 ~ 32263427 (-) True G73047
TU90581 other downstream 3171366 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 4237189 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 20907178 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 21771524 10796716 ~ 10798147 (-) True G69537
TU91373 other upstream 22776 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 22776 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 227172 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 2194897 34769583 ~ 34769979 (-) True G73328
TU91914 other upstream 3005940 35580626 ~ 35608677 (-) True AMCG00014839

Expression Profile