RNA id: TU91622


Basic Information

Item Value
RNA id TU91622
length 4019
RNA type TUCP
GC content 0.39
exon number 5
gene id G73343
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 34942011 ~ 34960447 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacccccacccaacATGCAGCGAATCACTTCCTTACCTGCACCAGGACAGCTTTAGAACCAGTATGCTGAAAGCATCATTAGATCTTAATGTActacatacaaatacagtaatacataGGGGCATTGAGCCCATTCTTAGACAAAAAAAGGTTAATGATGCAAGACACTGcatcttcattttaattattacattatcttACGAAACATTACATCACAGAGGGTCTATGTTAAGATCACACAAGAAACTTTCTCCCACCAACCTTTAAACAGTTTCCTAAGAAAACCTTTGAATCAACATGTAGCTACCTAACTGTGTTCCTTGTAGTGGGCATCAATAGCTTGCAGCTGAAGATTTTGTTATGTAcctttaattatattatgtaattgtataattttagCCTGGTCTCATCAAATAACTTCTAATACTATACAATACAGGGCATGTCTTTCCTTGCCCAGAGCAGTAATTACATCTGCACCTGTGTGATCTTAAGATGAGAAGAAATGTTAGGGTTATTCAGTCGTTAGGATGGTCATGTTCAAATACACTAACTTACTTTAGAGCAGAACAATAAGAGTCACTACAAAAACAAGGCCTCTCAGCTCCTAGTAGCGCAAAACAACCTAGATATAGTCTTAAACactgttcaaaatatatatttttaaatcaagatcATTTCTCCAACCACTTCAATAactacaattaatataaattgagGCAtgatccattaaaaaaatactttgggAGATTCTACAGTCAAAGGATGATAAGTGAAAGTttcctgttaaaaacaaacaaaagaaacaggaTGGTGGATagtcaattaaaatcaaaagccTCCTCTCATTTAGAAAGATTGTTGAGCACAGCCCACATCAGTATAATAAGCCAACTTTTCAGACTTTCCAGAGAACACTTCAACATGAAGCTACCATACAGTTAAAAAGTACAAGCTGCAGAGTTCATTCAGTTGGTTTTAAAGAGAAGGATAGTTTGGGCCTAGACTTTCCCTTGCCCAAGATCAGTTTTTGCTCTTCTTTTTGCTGACGCTGTCTTTCTTGTTCTAATTTCATCCTTTCCTCATgaatttttctttgttcttctaCAATTTTCAATTGCTCTTCagcCAATTTAGCTTGAGCATCTGCAATTTTACGGTTATTTTCTTCCAATATTTTCTCCAGCTCTTCCCGTTTCGCTCTTTCTTCCTCCTAAATGGGAGACACGATGCAATGTTAGACCCAGTATGGGCTCATAAGGTTAGTTTCACCTATGCTTGCTCACAGAACTGTTTTGTGCCCTGACTCCTATAACAAAGGGTAGCATTAGAGCCCCCTGTGTTGcacaaactaaaacatacatttaaaaaaaaaaaaaaaaaaaaaaaaaaaacgaacaaaaaaaaaaaaaaacccggATATCTCGTCTATGTTCACGACACCCTCCCATTAATTCAACCACCAAAGCTAAACCCTCCCTGCTCATTAAGTACTTTAAGGAAAAAATGCATACTTGTATATCTACATACAAAGAAACATCACAATCAATAGTTGATGactataaagaaaaataactttctaGCAATTATTTCACTTTATCAACATAGCagaaaaatgaagagaaaaaaattgaatagtTTGGCTCACCAATTTATGTATACCTACGCATTCTTTACCTATACTCCATTTATCAGCATTAAAAGTTGCATATTTACTGTCTTGTCCAGtgtcctgcagagagagagagagtgctccTCGGCTGCCAAACGCGCCAGCTTCCTCTTTAAACTGATTTGTACTGTTAGCGTGGCAACACCTGCATCTGCAGCTCAGCCATTTACAAGAAACACCATACAAATGCAAGCTGAGCTGAGGACTGCAGATATTTATGGTAAGAAGGAACAAAAGTAATGTAATTCATCATTCCTAAGGCAAACAATTGATAAGAAACATACTGTTAGTtgtagtaaaaaaacaaaaaatagtgcAAGTTTAATCCAAGCTCTAAAGAATCCGCTGTCCTCAAACAGTCAATCGGAAGCAAAGTTACCGTTAAAATTCGGGttgaaaattgttttattacaaaaaaaggcATGAGCAAAATTATCCCAGGTGCACAACCTCcgagtttaattttttttttcatttaaatgcaagcCTGTGTTGTGAAGTGTCACACAAAAACGCCTGCCACTTTTAAGGTCTACCGTTTATGATCCTTGTGTTATTAGTAACGAGCTATTGACCAGTACTAGTCAATACCAGTGAGGAAGCTAgttctgaattaaatgtaaaaataatgtaggcttaactatttaaaagcactatttcATTAAAAGTATTATAGTCCAATATGAACTGTACAATGactgtaatattaaataaagtaaagtaaCAGTGTAATTATCTACAGCAGTCCCCATCTCTTGTCCAAAGCTCGGCAAAAGTCCCATATGAAACAATGCTGCAGTCAGAAGTCATAAACcagtgtattcattttttttttttaagccatttCCCCTGATTTCTAGCTGCTACTGTACACGAGCATCCTCACATTTAGAATGGAACcgaaaacctaaaaaaaaaacgcatgcaacttgactttaaaaaaacaagtttggTACAAAGGtatcatctttctttttaaaaccatCTACATTAAATCGCTTGAGGGGGAGGAAGAACAACTCCTTTGTGTGAAGcaagtattttaaaagaatgtatTTGTACTGCAAGATACTTGGTCTGCTTACTgaaatttaaatgtcattagtCGGGTACTTTTCCACTGAATGatttcatttctattttaattatggGAATTCTAAGCTTCTAACCTAATCCGTTTACTGAAAATAAACCGCTTAATACTAAAAGctacaaaaaatataacttCCTCTACAGATCTTTTAATgacagcaaacaaaataaaaatgatgataTAGTAAGGTAGGTAGTGTAACTGGGAGCTATAGACAAAAAAATGCTTGCCAAATTCTGTCTCAGTCACATGGCTCTGCTTCAGACAGAGGAAGGGCTAGACTGCTTTTTAACTACCAAGTAAGTGATACAGGAAAGCGGGGTCGGTAATTCAACTTAAACTTTCAAATACCCTTTTATtataacaaattacaaaaatagaaaagttttaaaaatatttaaaaaaaagggagCAGTGGGGTGGATTAAAGGATGATGTTGATAATTCTTTCTGCAGCCATTCCCAACGACCAAGCGTTACCTCTCTAGCTTTCTGCGCTGCGAGCTCAGCTTGCCGCTGTCGCTCCAGCTCCTCGAGCAACTGTTTCTCCATGATGCGCTTGGCCTCCTCCACCCTCCGGAGCACCTCACGCTCAATCTCATCTTTCCGCTTCTCAAGCTCCTCCTCCACCCTCTTGGCCACCAGCTCCTCCACCCTTCGTGCCGTCTCCTCCTCGATCAGCTTCTCCTCGATCTCCTGCTGCCGTATTTTCCGTTGCCTTTCCAATTCGgcttttttctcctcttcctcctttttttgtttctcatcaAGGCTGCTCCTTTTGCTAACCGTACGCCCGAAGATGTCGATTCTGTCAGGGGGAGAAGCGGCTCGCTCTcggtctctctccctctctctgcggGACGCGGCTGTGGTAGAGCGGGAGCGAGACCGAGACTCTCTACGGCGGTTTCTCTTCGCTTCTCGGGATTTTGATCGCTTCTTagctctctctttgtctctggaCCTAGACCTTGATCTGCTCCTTTTCTTGTTGTGCTTGCTGCTCTTTGAGTGCTTGGAGCGGGACGAGCTGCGACTACGGGAGCGACCCATGATCGCCGGCTCAAACCTTACGACCTTAATAATCAATCGCTGACTTTAAACGCTTTATATGTCGGATTGATCTTCGCAGTGGTACCCCCGAATGTGTTCAGTAAAAATTACAATGTCGTCTCTAATTTGTAAGTAAACCTTAATATTTTCACAACCCGATAACTCTATCCACCAAGCAAGATGGCGACTGTCTCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91606 lncRNA upstream 172053 34769583 ~ 34769958 (+) True G73327
TU91605 lncRNA upstream 188240 34753537 ~ 34753771 (+) True G73326
TU91600 lncRNA upstream 331599 34610180 ~ 34610412 (+) True G73321
TU91583 lncRNA upstream 491627 34450155 ~ 34450384 (+) True G73304
TU91576 lncRNA upstream 579063 34362707 ~ 34362948 (+) True G73297
TU91640 lncRNA downstream 118212 35078659 ~ 35078896 (+) True G73354
TU91642 lncRNA downstream 208502 35168949 ~ 35169206 (+) True G73356
TU91660 lncRNA downstream 293422 35253869 ~ 35256115 (+) True G73374
TU91667 lncRNA downstream 307197 35267644 ~ 35268081 (+) True G73380
TU91689 lncRNA downstream 430187 35390634 ~ 35412587 (+) True AMCG00014836
AMCG00014831 mRNA upstream 10151 34691085 ~ 34931860 (+) True AMCG00014831
AMCG00014827 mRNA upstream 1163763 33697523 ~ 33778248 (+) True AMCG00014827
AMCG00014822 mRNA upstream 2173032 32758965 ~ 32768979 (+) True AMCG00014822
AMCG00014821 mRNA upstream 2185874 32734868 ~ 32756137 (+) True AMCG00014821
AMCG00014817 mRNA upstream 2278857 32653743 ~ 32663154 (+) True AMCG00014817
AMCG00014833 mRNA downstream 67410 35027857 ~ 35320982 (+) True AMCG00014833
AMCG00014835 mRNA downstream 410537 35370984 ~ 35382903 (+) True AMCG00014835
AMCG00014836 mRNA downstream 433863 35394310 ~ 35412072 (+) False AMCG00014836
AMCG00014834 mRNA downstream 503554 35464001 ~ 35474369 (+) True AMCG00014834
AMCG00014837 mRNA downstream 590710 35551157 ~ 35551807 (+) True AMCG00014837
TU91608 other upstream 161421 34780122 ~ 34780590 (+) True G73329
TU91569 other upstream 702611 34238934 ~ 34239400 (+) True G73292
TU91511 other upstream 1575911 33364755 ~ 33366100 (+) True G73244
TU91344 other upstream 2380522 32542510 ~ 32561489 (+) True G73103
TU91144 other upstream 3187081 31717118 ~ 31754930 (+) True G72925
TU91690 other downstream 430187 35390634 ~ 35394649 (+) False AMCG00014836
TU92227 other downstream 2557661 37518108 ~ 37518406 (+) True G73850
TU92541 other downstream 3471927 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 3850246 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 4375821 39336268 ~ 39475819 (+) True G74348

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU102824 True 291 lncRNA 0.47 1 NC_048565.1 83342021 ~ 83342311 (+)
tiger barb (Puntius tetrazona) TU102824 True 2897 lncRNA 0.45 2 NC_056707.1 12005701 ~ 12009922 (+)