Fish Single-cell RNA Database

CELL TYPE: Blue cone opsin

Distribution of Blue cone opsin in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000045677	opn1sw1	4: 13577665 ~ 13580348 (-)
ENSDARG00000059043	ntf3	4: 4397503 ~ 4431975 (-)
ENSDARG00000003512	anks1b	4: 17886838 ~ 18202291 (-)
ENSDARG00000019420	etnk1	4: 16885854 ~ 16906923 (+)
ENSDARG00000053480	aqp9b	7: 30371893 ~ 30390376 (+)
ENSDARG00000043010	camk2d1	7: 57725708 ~ 57880131 (+)
ENSDARG00000044815	serinc4	7: 50448478 ~ 50477289 (+)
ENSDARG00000070107	six7	7: 7401692 ~ 7420301 (-)
ENSDARG00000034434	igf1rb	7: 15446229 ~ 15610129 (+)
ENSDARG00000069030	skor1a	7: 33954099 ~ 33961551 (-)
ENSDARG00000075110	dab2ipb	5: 33679559 ~ 33886495 (-)
ENSDARG00000078270	CU467961.1	5: 54945021 ~ 55114917 (-)
ENSDARG00000009418	mef2cb	5: 48179340 ~ 48307804 (-)
ENSDARG00000027345	mpzl2b	5: 37948283 ~ 37963763 (-)
ENSDARG00000041299	zgc:110796	5: 6617401 ~ 6620005 (+)
ENSDARG00000089382	zgc:158463	5: 824709 ~ 825920 (-)
ENSDARG00000099499	ndufa4l	3: 20947560 ~ 20957083 (-)
ENSDARG00000038068	ddx5	3: 25269861 ~ 25275403 (-)
ENSDARG00000059768	gpatch8	3: 37662444 ~ 37699992 (-)
ENSDARG00000076847	tnrc6c1	3: 34258755 ~ 34337969 (-)
ENSDARG00000010680	gngt2a	3: 23092762 ~ 23096141 (+)
ENSDARG00000099149	hs3st3b1a	3: 48842918 ~ 48869632 (+)
ENSDARG00000060309	srgap3	6: 41554794 ~ 41757181 (+)
ENSDARG00000018032	scn8ab	6: 39392442 ~ 39489190 (-)
ENSDARG00000009447	atp5mc3b	6: 10830844 ~ 10835922 (-)
ENSDARG00000098280	rbm5	6: 53263854 ~ 53282595 (-)
ENSDARG00000074311	mast2	6: 33663666 ~ 33871055 (-)
ENSDARG00000096398	si:ch211-276a17.5	6: 8339298 ~ 8346939 (+)
ENSDARG00000053939	tgfa	6: 40992409 ~ 41009381 (+)
ENSDARG00000044279	opn1mw3	6: 41191482 ~ 41193419 (+)
ENSDARG00000070726	cnga3a	6: 38791900 ~ 38818582 (-)
ENSDARG00000062123	agap1	6: 16043318 ~ 16394528 (-)
ENSDARG00000009677	dlg1	6: 29860776 ~ 30082922 (+)
ENSDARG00000102558	pde6ha	6: 344423 ~ 346084 (-)
ENSDARG00000038859	rgs20	2: 30752501 ~ 30784502 (-)
ENSDARG00000102216	dlg1l	2: 4900213 ~ 5074812 (-)
ENSDARG00000032465	slc1a8b	2: 37110504 ~ 37122351 (+)
ENSDARG00000031658	si:ch211-207d6.2	2: 29795833 ~ 29896572 (+)
ENSDARG00000100494	pbx1a	2: 18698388 ~ 18830794 (-)
ENSDARG00000061490	u2surp	2: 26623377 ~ 26642944 (-)
ENSDARG00000005941	clul1	2: 31271082 ~ 31364659 (+)
ENSDARG00000020602	grk7a	2: 16536453 ~ 16544343 (+)
ENSDARG00000094677	si:dkey-92j12.5	1: 23161369 ~ 23240046 (+)
ENSDARG00000078326	arhgap10	1: 36771954 ~ 36913091 (+)
ENSDARG00000042988	slc24a2	1: 12009673 ~ 12044390 (+)
ENSDARG00000102506	lrp2a	9: 48415043 ~ 48672254 (+)
ENSDARG00000058222	mpp4a	9: 13682133 ~ 13711991 (+)
ENSDARG00000103155	ext1a	16: 48460873 ~ 48573510 (+)
ENSDARG00000061904	fhod3b	16: 18608978 ~ 18960613 (-)
ENSDARG00000019902	rcvrn2	16: 13911692 ~ 13921589 (-)
ENSDARG00000043257	ckbb	20: 20816747 ~ 20821789 (-)
ENSDARG00000031100	ivns1abpa	20: 34320635 ~ 34341183 (+)
ENSDARG00000101924	si:dkey-65b13.13	20: 33513664 ~ 33515890 (-)
ENSDARG00000017634	pdcb	20: 34084331 ~ 34090740 (-)
ENSDARG00000010301	b4galt6	20: 6163932 ~ 6196989 (-)
ENSDARG00000094516	es1	8: 4838114 ~ 4850816 (+)
ENSDARG00000042529	gnat2	8: 25225590 ~ 25247284 (-)
ENSDARG00000026229	prnpa	8: 43053519 ~ 43056975 (+)
ENSDARG00000057419	slc44a5b	8: 17838924 ~ 17917668 (+)
ENSDARG00000078917	zgc:195245	8: 23776570 ~ 23780402 (-)
ENSDARG00000034270	ogdha	8: 45762484 ~ 45838481 (-)
ENSDARG00000061736	ank3a	17: 20701582 ~ 20897407 (-)
ENSDARG00000044056	ahi1	17: 8229868 ~ 8268406 (-)
ENSDARG00000032932	cnksr1	17: 26990531 ~ 27048640 (-)
ENSDARG00000101485	si:ch1073-469d17.2	17: 51201217 ~ 51202339 (-)
ENSDARG00000103746	mapkbp1	17: 10593398 ~ 10703926 (+)
ENSDARG00000087780	tiam2a	17: 49081828 ~ 49218502 (+)
ENSDARG00000061603	sorbs2b	14: 29807097 ~ 29906209 (-)
ENSDARG00000105441	pcdh11	14: 26995114 ~ 27121854 (-)
ENSDARG00000076060	diaph2	14: 39255437 ~ 39957445 (+)
ENSDARG00000005482	rapgef2	14: 47779846 ~ 48033073 (-)
ENSDARG00000098475	arr3b	14: 32837914 ~ 32850768 (+)
ENSDARG00000105243	ogt.1	14: 14721300 ~ 14746767 (-)
ENSDARG00000092553	slc25a5	14: 32881625 ~ 32884138 (-)
ENSDARG00000099859	CR383676.1	14: 45631180 ~ 45631235 (-)
ENSDARG00000079056	si:ch211-194c3.5	13: 13693722 ~ 13737694 (+)
ENSDARG00000062489	march8	13: 17751866 ~ 18011208 (-)
ENSDARG00000104223	lmbrd1	13: 38621517 ~ 38792061 (-)
ENSDARG00000011862	inaa	13: 28675686 ~ 28681036 (+)
ENSDARG00000039269	arg2	13: 33024547 ~ 33034374 (+)
ENSDARG00000060149	ablim1a	13: 43507383 ~ 43599939 (-)
ENSDARG00000092402	BX569787.1	18: 23877624 ~ 23889042 (+)
ENSDARG00000018726	slco3a1	18: 25073984 ~ 25177230 (-)
ENSDARG00000097017	mical3a	18: 10784730 ~ 10921383 (+)
ENSDARG00000061699	sipa1l3	18: 37015185 ~ 37201550 (+)
ENSDARG00000076997	stxbp4	12: 32073660 ~ 32145981 (+)
ENSDARG00000020521	exoc6	12: 8968275 ~ 9087566 (-)
ENSDARG00000100397	pde6c	12: 5129245 ~ 5154099 (+)
ENSDARG00000043820	nme2a	12: 20788243 ~ 20796658 (-)
ENSDARG00000103543	gngt2b	12: 3249054 ~ 3252263 (-)
ENSDARG00000002696	gnb3b	19: 5106226 ~ 5135345 (-)
ENSDARG00000061479	thsd7aa	19: 37620342 ~ 37842003 (+)
ENSDARG00000061458	phf14	19: 38167468 ~ 38327733 (+)
ENSDARG00000009637	rcvrn3	19: 10339538 ~ 10352579 (+)
ENSDARG00000028533	macf1a	19: 35039902 ~ 35340027 (-)
ENSDARG00000011334	ncaldb	19: 12297100 ~ 12324514 (-)
ENSDARG00000102690	rims2b	19: 13099541 ~ 13186822 (+)
ENSDARG00000006120	tbx2b	15: 27364394 ~ 27371340 (+)
ENSDARG00000035765	CU633984.1	15: 6678521 ~ 6727082 (+)
ENSDARG00000020946	auts2b	15: 20004766 ~ 20024205 (-)
ENSDARG00000060697	kmt2bb	15: 37457009 ~ 37543839 (-)
ENSDARG00000030758	guca1c	15: 2884711 ~ 2903475 (-)
ENSDARG00000008788	camk1gb	23: 39558508 ~ 39597901 (+)
ENSDARG00000077881	chl1a	23: 11285662 ~ 11452312 (+)
ENSDARG00000089063	lactbl1a	23: 21964325 ~ 21974831 (+)
ENSDARG00000079307	si:dkey-205h13.1	23: 26503876 ~ 26523026 (-)
ENSDARG00000058873	ptpdc1b	23: 4373336 ~ 4390318 (+)
ENSDARG00000093702	si:dkey-126g1.9	23: 31933583 ~ 31940912 (+)
ENSDARG00000059978	cplx4a	21: 10739846 ~ 10749542 (+)
ENSDARG00000010717	chchd10	21: 15704556 ~ 15708626 (+)
ENSDARG00000044629	guca1d	21: 22906479 ~ 22910530 (-)
ENSDARG00000044684	rbp4l	21: 20338613 ~ 20342096 (-)
ENSDARG00000079031	si:ch211-22d5.2	21: 20722172 ~ 20733615 (-)
ENSDARG00000074508	si:dkey-28e7.3	11: 11595973 ~ 11625630 (-)
ENSDARG00000074519	BX248501.1	11: 6205969 ~ 6224120 (+)
ENSDARG00000079742	mcf2l2	11: 10467299 ~ 10663122 (-)
ENSDARG00000074904	si:ch211-253b8.5	11: 7039259 ~ 7078475 (-)
ENSDARG00000104204	slc1a8a	11: 15068307 ~ 15090564 (-)
ENSDARG00000043009	fam43a	11: 34235356 ~ 34237802 (+)
ENSDARG00000020328	plekha6	11: 23342996 ~ 23501467 (-)
ENSDARG00000017274	opn1sw2	11: 25459697 ~ 25475403 (+)
ENSDARG00000036462	rab11fip1b	10: 41318583 ~ 41352608 (-)
ENSDARG00000062361	paxbp1	10: 24422017 ~ 24442546 (+)
ENSDARG00000099532	ubl3a	10: 36363318 ~ 36406562 (-)
ENSDARG00000056511	arr3a	10: 26800213 ~ 26811397 (+)
ENSDARG00000104094	grk3	10: 44057177 ~ 44198211 (+)
ENSDARG00000069615	ckmt2a	10: 3111004 ~ 3129887 (+)
ENSDARG00000101368	cngb3.2	24: 31430890 ~ 31452923 (-)
ENSDARG00000101567	guca1e	22: 1092479 ~ 1109547 (+)
ENSDARG00000062420	nfia	22: 16839467 ~ 17052381 (-)
ENSDARG00000100105	impg2b	22: 28320792 ~ 28353899 (+)
ENSDARG00000071394	foxq2	22: 20427170 ~ 20429374 (+)
ENSDARG00000023537	ahr1b	22: 12979213 ~ 13042992 (-)
ENSDARG00000099768	si:ch211-272n13.3	25: 3573095 ~ 3647277 (-)
ENSDARG00000102204	jph3	25: 12640211 ~ 12696137 (+)
--	cry1ba	--
--	pde6h	--
--	loc101886015	--
--	mfn1	--
--	mir22a	--
--	nc-002333.4	--
--	si:dkey-187e18.1	--
--	si:dkey-44k1.5	--
--	tmem74	--
--	zmp:0000000545	--
--	cu302253.1.1	--
--	loc100537874	--
--	mstrg.17465	--
--	mstrg.19597	--
--	mstrg.19598	--
--	mstrg.22585	--
--	mstrg.22811	--
--	mstrg.6849	--
--	mstrg.7169	--
--	mstrg.731	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Blue cone opsin.

Detail Marker Information in Datasets

	Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
	GSE175929 (5mpf)	Danio rerio	retina	1	Blue cone opsin	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	ENSDARG00000017274 (opn1sw2)	marker	DOI:10.1038/s41598-021-96837-z
	GSE175929 (5mpf)	Danio rerio	retina	3	Blue cone opsin	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	ENSDARG00000017274 (opn1sw2)	marker	DOI:10.1038/s41598-021-96837-z

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Blue cone opsin

Distribution of Blue cone opsin in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences