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| Symbol | Location | Gene type | Genome version | Species |
|---|---|---|---|---|
| si:ch211-276a17.5 | 6: 8339298 ~ 8346939 (+) | protein_coding | GRCz11 | Danio rerio |
: marker.| Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
|---|---|---|---|---|---|---|---|
| GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment |
Retina (cluster: 10) |
potential marker |
NA |
|
| GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment |
Retina (cluster: 11) |
potential marker |
NA |
|
| GSE158142 (3dpf) | head | baseline | 3dpf, untreatment |
Retina (cluster: 11) |
potential marker |
NA |
|
| GSE175929 (5mpf) | retina | baseline | 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg |
Blue cone opsin (cluster: 3) |
potential marker |
NA |
|
| GSE122680 (3dpf) | retina | baseline | 3dpf, WT, untreatment |
Photoreceptor cells (cluster: 3) Photoreceptor cells (cluster: 8) |
potential marker potential marker |
NA NA |
|
| GSE122680 (14dpf) | retina | baseline | 14dpf, WT, untreatment |
Photoreceptor cells (cluster: 5) |
potential marker |
NA |
|
| GSE122680 (2dpf) | retina | baseline | 2dpf, WT, untreatment |
Photoreceptor cells (cluster: 11) Retinal progenitors (cluster: 4) Photoreceptor cells (cluster: 11) Retinal progenitors (cluster: 4) |
potential marker potential marker potential marker potential marker |
NA NA NA NA |
|
| PRJNA672101 (nrl-KO) | retina | growth | 5mpf, three retinas from nrl-KO zebrafsih |
Cone (cluster: 3) |
potential marker |
NA |
|
| PRJNA672101 (WT) | retina | baseline | 5mpf, three retinas from WT zebrafsih |
Cone (cluster: 4) |
potential marker |
NA |
|
| PRJNA415636 (brain) | brain | baseline | adult, Zebrabow M, brain | ||||
| PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish | ||||
| GSE158142 (15dpf) | brain, eye | baseline | 15dpf, untreatment | ||||
| GSE151354 (wild type) | cartilage | baseline | 21dpf, wild type | ||||
| GSE151354 (nkx3.2 mutant) | cartilage | growth | 21dpf, nkx3.2 mutant | ||||
| PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development | ||||
| GSE106587 (MZoep mutant) | embryo | baseline | 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo | ||||
| PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development | ||||
| GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos | ||||
| PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development | ||||
| GSE161712 (M. marinum) | granulomas | disease | adult, infected with bacteria of M. marinum | ||||
| GSE158142 (16hpf) | head | baseline | 16hpf, 14 somites, untreatment | ||||
| GSE158142 (2dpf) | head | baseline | 2dpf, untreatment | ||||
| GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment | ||||
| GSE158142 (24hpf) | head | baseline | 24hpf, untreatment | ||||
| GSE158142 (20hpf) | head | baseline | 20hpf, 21-22 somites, untreatment | ||||
| GSE158142 (1.5dpf) | head | baseline | 1.5dpf, untreatment | ||||
| PRJNA608912 (kit_2dpi) | heart | regeneration | 5mpf, kit mutant, 2 days post injury | ||||
| PRJNA608912 (wt_unjuried) | heart | baseline | 5mpf, wild type, uninjured | ||||
| PRJNA608912 (wt_7dpi) | heart | regeneration | 5mpf, wild type, 7 days post injury | ||||
| PRJNA608912 (wt_14dpi) | heart | regeneration | 5mpf, wild type, 14 days post injury | ||||
| PRJNA754013 (zebrafish) | hypothalamus | baseline | adult, male, female, untreatment | ||||
| GSE137784 (HCC, HepABC) | liver | disease | 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC | ||||
| PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae | ||||
| PRJNA668529 (3d) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 days | ||||
| PRJNA668529 (3h) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 hours | ||||
| GSE148591 (3mpf) | pituitary | transplant | 3mpf, graft transplantation during early embryogenesis | ||||
| GSE148591 (6mpf) | pituitary | baseline | 6mpf, male, Sox17:CreERT2 | ||||
| GSE122680 (1.5dpf) | retina | baseline | 1.5dpf, WT, untreatment | ||||
| GSE122680 (24hpf) | retina | baseline | 24hpf, WT, untreatment | ||||
| PRJNA551501 (2mpf) | thyroid gland | baseline | 2mpf, Tg(tg:mVenus-T2A-NTR) | ||||
| PRJNA551501 (8mpf) | thyroid gland | baseline | 8mpf, Tg(tg:mVenus-T2A-NTR) | ||||
| GSE163907 (24hpf) | trunk | baseline | 24hpf, trunk tg(sox10:GFP) positive cells | ||||
| GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone | ||||
| PRJNA641144 (P_INV) | tumor | disease | adult, ZMEL1-INV cells in vivo primary tumors | ||||
| PRJNA641144 (M_INV) | tumor | disease | adult, ZMEL1-INV cells in vivo metastases | ||||
| PRJNA641144 (M_PRO) | tumor | disease | adult, ZMEL1-PRO cells in vivo metastases | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 10dpf, cd41:GFPlow-runx1-/- | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 2.5dpf, cd41:GFPlow-runx1-/- | ||||
| GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
| GSE158099 (WT) | whole body | baseline | 16dpf, cd41:GFPlow-WT | ||||
| GSE158099 (WT) | whole body | baseline | 6dpf, cd41:GFPlow-WT | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
| GSE158099 (WT) | whole body | baseline | 10dpf, cd41:GFPlow-WT | ||||
| GSE158099 (WT) | whole body | baseline | 2.5dpf, cd41:GFPlow-WT |