DATASET ID: PRJNA564810 (5dpf)


Basic information


Tissue / Organ embryo
Experiment type baseline
Sample 5dpf, a single-cell transcriptome atlas for zebrafish development
Source dataset ID SRR10095964
Project ID PRJNA564810
Species Danio rerio

Clustering Result


Function


  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.
  • Marker Relationship


    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Cranial neural crest ENSDARG00000044935 (hpdb) protein_coding marker DOI:10.1093/g3journal/jkac062
    1 Cranial neural crest ENSDARG00000045979 (zgc:153704) protein_coding marker DOI:10.1093/g3journal/jkac062
    1 Cranial neural crest ENSDARG00000071095 (abi3bpb) protein_coding marker DOI:10.1093/g3journal/jkac062
    2 Neuron ENSDARG00000018259 (atp1a3a) protein_coding marker DOI:10.1093/g3journal/jkac062
    3 Neuron ENSDARG00000003469 (neurod4) protein_coding marker DOI:10.1093/g3journal/jkac062
    4 Periderm cells ENSDARG00000040534 (epcam) protein_coding marker DOI:10.1093/g3journal/jkac062
    4 Periderm cells ENSDARG00000016691 (cd9b) protein_coding marker DOI:10.1093/g3journal/jkac062
    4 Periderm cells ENSDARG00000055514 (icn2) protein_coding marker DOI:10.1093/g3journal/jkac062
    6 Chondrocytes ENSDARG00000073699 (col9a1a) protein_coding marker DOI:10.7554/eLife.16415
    7 Neuron ENSDARG00000003469 (neurod4) protein_coding marker DOI:10.1093/g3journal/jkac062
    8 Hematopoietic cells ENSDARG00000045142 (hbae5) protein_coding marker DOI:10.1093/g3journal/jkac062
    8 Hematopoietic cells ENSDARG00000092945 (si:ch211-250g4.3) protein_coding marker DOI:10.1093/g3journal/jkac062
    8 Hematopoietic cells ENSDARG00000029019 (epb41b) protein_coding marker DOI:10.1093/g3journal/jkac062
    9 Epidermal cells ENSDARG00000102750 (cdh1) protein_coding marker DOI:10.1093/g3journal/jkac062
    10 Neuroblast ENSDARG00000041799 (cx43) protein_coding marker DOI:10.1093/g3journal/jkac062
    10 Neuroblast ENSDARG00000102340 (ptn) protein_coding marker DOI:10.1093/g3journal/jkac062
    10 Neuroblast ENSDARG00000091579 (si:ch211-66e2.5) protein_coding marker DOI:10.1093/g3journal/jkac062
    11 Neuron ENSDARG00000070107 (six7) protein_coding marker DOI:10.1093/g3journal/jkac062
    11 Neuron ENSDARG00000075295 (tulp1a) protein_coding marker DOI:10.1093/g3journal/jkac062
    11 Neuron ENSDARG00000010680 (gngt2a) protein_coding marker DOI:10.1093/g3journal/jkac062
    12 Skeletal muscle cells ENSDARG00000007344 (tcap) protein_coding marker DOI:10.1093/g3journal/jkac062
    12 Skeletal muscle cells ENSDARG00000020574 (atp2a1) protein_coding marker DOI:10.1093/g3journal/jkac062
    13 Epidermal cells ENSDARG00000102750 (cdh1) protein_coding marker DOI:10.1093/g3journal/jkac062
    14 Multipotent cells ENSDARG00000055186 (ccr9a) protein_coding marker DOI:10.1093/g3journal/jkac062
    15 Enteric smooth muscle ENSDARG00000045180 (acta2) protein_coding marker DOI:10.1093/g3journal/jkac062
    15 Enteric smooth muscle ENSDARG00000045408 (tagln) protein_coding marker DOI:10.1093/g3journal/jkac062
    16 Photoreceptor cells ENSDARG00000029898 (cnga1a) protein_coding marker DOI:10.1093/g3journal/jkac062
    16 Photoreceptor cells ENSDARG00000070666 (rhol) protein_coding marker DOI:10.1093/g3journal/jkac062
    16 Photoreceptor cells ENSDARG00000058803 (grk1a) protein_coding marker DOI:10.1093/g3journal/jkac062
    17 Intesinal epithelial cells ENSDARG00000016081 (cldn15la) protein_coding marker DOI:10.1093/g3journal/jkac062
    17 Intesinal epithelial cells ENSDARG00000101979 (eps8l3a) protein_coding marker DOI:10.1093/g3journal/jkac062
    17 Intesinal epithelial cells ENSDARG00000112049 (cldn15a) protein_coding marker DOI:10.1093/g3journal/jkac062
    18 Iridophore ENSDARG00000060345 (apoda.1) protein_coding marker DOI:10.1093/g3journal/jkac062
    18 Iridophore ENSDARG00000075629 (si:dkey-197i20.6) protein_coding marker DOI:10.1093/g3journal/jkac062
    18 Iridophore ENSDARG00000062688 (gpnmb) protein_coding marker DOI:10.1093/g3journal/jkac062
    18 Iridophore ENSDARG00000055172 (si:ch211-256m1.8) protein_coding marker DOI:10.1093/g3journal/jkac062
    18 Iridophore ENSDARG00000091792 (akap12a) protein_coding marker DOI:10.1093/g3journal/jkac062
    19 Hepatocytes ENSDARG00000016771 (tfa) protein_coding marker DOI:10.1093/g3journal/jkac062
    19 Hepatocytes ENSDARG00000087143 (serpina7) protein_coding marker DOI:10.1093/g3journal/jkac062
    19 Hepatocytes ENSDARG00000015866 (apoa2) protein_coding marker DOI:10.1093/g3journal/jkac062
    20 Hepatocytes ENSDARG00000016771 (tfa) protein_coding marker DOI:10.1093/g3journal/jkac062
    20 Hepatocytes ENSDARG00000087143 (serpina7) protein_coding marker DOI:10.1093/g3journal/jkac062
    20 Hepatocytes ENSDARG00000015866 (apoa2) protein_coding marker DOI:10.1093/g3journal/jkac062
    21 Endothelium ENSDARG00000105215 (kdrl) protein_coding marker DOI:10.1093/g3journal/jkac062
    21 Endothelium ENSDARG00000060263 (pecam1) protein_coding marker DOI:10.1093/g3journal/jkac062
    21 Endothelium ENSDARG00000030125 (sox7) protein_coding marker DOI:10.1093/g3journal/jkac062
    21 Endothelium ENSDARG00000103533 (clec14a) protein_coding marker DOI:10.1093/g3journal/jkac062
    21 Endothelium ENSDARG00000036616 (gpr182) protein_coding marker DOI:10.1093/g3journal/jkac062
    22 Oligodendrocytes ENSDARG00000036186 (mbpa) protein_coding marker DOI:10.1093/g3journal/jkac062
    23 Enteric smooth muscle ENSDARG00000045180 (acta2) protein_coding marker DOI:10.1093/g3journal/jkac062
    23 Enteric smooth muscle ENSDARG00000045408 (tagln) protein_coding marker DOI:10.1093/g3journal/jkac062
    24 Epidermal cells ENSDARG00000088514 (and1) protein_coding marker DOI:10.1093/g3journal/jkac062
    25 Lens ENSDARG00000037402 (lim2.3) protein_coding marker DOI:10.1093/g3journal/jkac062
    25 Lens ENSDARG00000102129 (crygn1) protein_coding marker DOI:10.1093/g3journal/jkac062
    25 Lens ENSDARG00000014803 (cryba1l2) protein_coding marker DOI:10.1093/g3journal/jkac062
    25 Lens ENSDARG00000068507 (crybb1) protein_coding marker DOI:10.1093/g3journal/jkac062
    26 Monocytes ENSDARG00000090873 (ccl34a.4) protein_coding marker DOI:10.1093/g3journal/jkac062
    26 Monocytes ENSDARG00000103466 (ccl35.1) protein_coding marker DOI:10.1093/g3journal/jkac062
    26 Monocytes ENSDARG00000059294 (marco) protein_coding marker DOI:10.1093/g3journal/jkac062
    27 Leukocytes ENSDARG00000087909 (il4) protein_coding marker DOI:10.1093/g3journal/jkac062
    27 Leukocytes ENSDARG00000093248 (si:dkey-238m4.4) protein_coding marker DOI:10.1093/g3journal/jkac062
    27 Leukocytes ENSDARG00000105530 (si:dkey-19b23.14) protein_coding marker DOI:10.1093/g3journal/jkac062
    27 Leukocytes ENSDARG00000007534 (itln1) protein_coding marker DOI:10.1093/g3journal/jkac062
    27 Leukocytes ENSDARG00000036940 (ctss1) protein_coding marker DOI:10.1093/g3journal/jkac062
    28 Pancreatic epsilon cells ENSDARG00000044204 (endou) protein_coding marker DOI:10.1093/g3journal/jkac062
    28 Pancreatic epsilon cells ENSDARG00000090899 (sycn.3) protein_coding marker DOI:10.1093/g3journal/jkac062
    28 Pancreatic epsilon cells ENSDARG00000024503 (c6ast3) protein_coding marker DOI:10.1093/g3journal/jkac062
    29 Epiphysis ENSDARG00000045153 (slc16a8) protein_coding marker DOI:10.1093/g3journal/jkac062
    29 Epiphysis ENSDARG00000078618 (inpp5kb) protein_coding marker DOI:10.1093/g3journal/jkac062
    29 Epiphysis ENSDARG00000087059 (selenou1b) protein_coding marker DOI:10.1093/g3journal/jkac062
    29 Epiphysis ENSDARG00000028862 (rdh20) protein_coding marker DOI:10.1093/g3journal/jkac062

    Expression



    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)