Fish Single-cell RNA Database

GENE ID: ENSDARG00000068507

Symbol	Location	Gene type	Genome version	Species
crybb1	10: 44021147 ~ 44027391 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000068507 (crybb1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000090428	ctrb1	7: 35075847 ~ 35079299 (+)
ENSDARG00000004082	cx39.9	5: 23630384 ~ 23635908 (+)
ENSDARG00000033382	grifin	3: 41784542 ~ 41795917 (-)
ENSDARG00000038089	NA	3: 27929505 ~ 27952302 (+)
ENSDARG00000011998	bfsp2	2: 32761130 ~ 32769759 (-)
ENSDARG00000016074	cryz	2: 11100613 ~ 11120220 (-)
ENSDARG00000015076	gja8b	1: 47446032 ~ 47448850 (+)
ENSDARG00000053502	cryaa	1: 29096881 ~ 29100923 (+)
ENSDARG00000057460	crygm2d13	9: 22091161 ~ 22092089 (-)
ENSDARG00000021889	gja3	9: 21407987 ~ 21409466 (+)
ENSDARG00000069451	gja8a	9: 30430188 ~ 30432778 (-)
ENSDARG00000041295	lim2.5	16: 50166421 ~ 50181206 (-)
ENSDARG00000005500	dgcr6	8: 1632622 ~ 1649242 (-)
ENSDARG00000074919	NA	13: 985442 ~ 992458 (-)
ENSDARG00000013251	hsf4	18: 22739732 ~ 22753637 (-)
ENSDARG00000015445	lim2.4	19: 10537443 ~ 10554352 (-)
ENSDARG00000041141	cryba1a	15: 28086193 ~ 28107505 (-)
ENSDARG00000042621	cryaba	15: 18119618 ~ 18124678 (-)
ENSDARG00000013963	mipb	23: 6637611 ~ 6641223 (-)
ENSDARG00000037285	mipa	23: 27068225 ~ 27072774 (+)
ENSDARG00000053875	cryba1b	21: 39185461 ~ 39195314 (+)
ENSDARG00000007715	lgsn	11: 11263451 ~ 11266882 (-)
ENSDARG00000068507	crybb1	10: 44021147 ~ 44027391 (-)
ENSDARG00000024548	cryba4	10: 44042033 ~ 44051808 (+)
ENSDARG00000059015	lim2.2	22: 3223489 ~ 3232634 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Lens (cluster: 25)	marker	DOI:10.1093/g3journal/jkac062
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	Lens (cluster: 23)	potential marker	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Lens (cluster: 29)	potential marker	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	Horizontal cells (cluster: 4)	potential marker	NA
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 13)	potential marker	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000068507

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences