DATASET ID: GSE158142 (18hpf)


Basic information


Tissue / Organ head
Experiment type baseline
Sample 18hpf, 18 somites, untreatment
Source dataset ID GSM4793191
Project ID GSE158142
Species Danio rerio

Clustering Result


Function


  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.
  • Marker Relationship


    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Cycling progenitors ENSDARG00000040041 (mcm4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    1 Cycling progenitors ENSDARG00000102798 (mcm2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Cycling progenitors ENSDARG00000002403 (nusap1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Cycling progenitors ENSDARG00000024488 (top2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Telencephalon ENSDARG00000031222 (lhx2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Telencephalon ENSDARG00000070769 (foxg1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Placode ENSDARG00000026473 (six1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Placode ENSDARG00000009544 (cldnb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Midbrain -- (eng2b) -- marker DOI:10.1016/j.neuron.2020.09.023
    5 Midbrain -- (eng2a) -- marker DOI:10.1016/j.neuron.2020.09.023
    6 Optic vesicle ENSDARG00000071684 (rx1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Optic vesicle ENSDARG00000005574 (vsx2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Optic vesicle ENSDARG00000071684 (rx1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Optic vesicle ENSDARG00000005574 (vsx2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Optic vesicle ENSDARG00000040321 (rx2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Neural crest ENSDARG00000062262 (ednrab) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Neural crest -- (fam212aa) -- marker DOI:10.1016/j.neuron.2020.09.023
    8 Neural crest ENSDARG00000077467 (sox10) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Comitted progenitors ENSDARG00000016725 (gadd45gb.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Comitted progenitors ENSDARG00000007097 (her13) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Mesoderm ENSDARG00000012060 (thbs3b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Mesoderm ENSDARG00000033971 (prrx1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Epidermal cells ENSDARG00000045887 (mmp30) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Epidermal cells ENSDARG00000033466 (tagln2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Epidermal cells ENSDARG00000116617 (spaca4l) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Epidermal cells ENSDARG00000103590 (cyp2aa6) unprocessed_pseudogene marker DOI:10.1016/j.neuron.2020.09.023
    11 Epidermal cells ENSDARG00000102415 (scinla) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Epidermal cells ENSDARG00000011956 (dlx4a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Epidermal cells ENSDARG00000003395 (col4a3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Rostral blood island (myeloid) ENSDARG00000053868 (etv2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Rostral blood island (myeloid) ENSDARG00000095019 (lmo2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Rostral blood island (myeloid) ENSDARG00000030125 (sox7) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Rostral blood island (myeloid) ENSDARG00000075549 (cdh5) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Rostral blood island (myeloid) ENSDARG00000105215 (kdrl) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Rostral blood island (myeloid) ENSDARG00000040080 (fli1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Neuron ENSDARG00000045639 (elavl4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Neuron ENSDARG00000009553 (gng3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Neuron ENSDARG00000099744 (gap43) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Neuron ENSDARG00000018997 (cplx2l) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Neuron ENSDARG00000039522 (tubb2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Neuron ENSDARG00000070537 (stmn2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Placode ENSDARG00000069503 (cldnh) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Floor plate ENSDARG00000031483 (col9a1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Floor plate ENSDARG00000023694 (spon1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Floor plate ENSDARG00000038867 (shhb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Floor plate ENSDARG00000076904 (loxl5b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Floor plate ENSDARG00000021462 (daw1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Periderm cells ENSDARG00000007024 (uox) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Periderm cells ENSDARG00000101407 (tgm1l4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Periderm cells ENSDARG00000076839 (ftr86) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Periderm cells ENSDARG00000009196 (anxa3a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Periderm cells ENSDARG00000035178 (gna14) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Periderm cells ENSDARG00000029290 (stx11b.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    18 Heart primordium ENSDARG00000019096 (myl7) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    18 Heart primordium ENSDARG00000055618 (acta1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    18 Heart primordium ENSDARG00000052708 (tnni1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    18 Heart primordium ENSDARG00000042018 (fhl2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    18 Heart primordium ENSDARG00000041257 (smtnl1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    18 Heart primordium -- (vmhc) -- marker DOI:10.1016/j.neuron.2020.09.023
    18 Heart primordium -- (nexn.1) -- marker DOI:10.1016/j.neuron.2020.09.023
    18 Heart primordium ENSDARG00000011400 (tnnc1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    18 Heart primordium ENSDARG00000008433 (unc45b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    20 Blood precursors ENSDARG00000114451 (mmp13a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    20 Blood precursors ENSDARG00000000767 (spi1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    20 Blood precursors ENSDARG00000013539 (ikzf1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    20 Blood precursors ENSDARG00000033735 (ncf1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023

    Expression



    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)