Fish Single-cell RNA Database

CELL TYPE: Floor plate

Distribution of Floor plate in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000045676	calua	4: 13568469 ~ 13576215 (+)
ENSDARG00000056950	epyc	4: 16317296 ~ 16334362 (-)
ENSDARG00000045822	tnnt2e	4: 7508316 ~ 7544687 (+)
ENSDARG00000078520	ikbip	4: 77966055 ~ 77974820 (+)
ENSDARG00000032405	ckap4	4: 77975221 ~ 77979432 (-)
ENSDARG00000030614	syt1a	4: 21129752 ~ 21315399 (+)
ENSDARG00000017355	rsph9	4: 5645251 ~ 5652030 (-)
ENSDARG00000040610	si:ch73-352p4.8	4: 5796761 ~ 5807645 (+)
ENSDARG00000088002	wu:fc23c09	4: 16447485 ~ 16451375 (-)
ENSDARG00000004447	aplnr2	7: 38685545 ~ 38689562 (-)
ENSDARG00000035984	mnx1	7: 40638210 ~ 40641006 (+)
ENSDARG00000099819	sb:cb1058	7: 25033924 ~ 25040976 (+)
ENSDARG00000000442	slc39a13	7: 32693890 ~ 32716019 (+)
ENSDARG00000036152	gas2b	7: 32746914 ~ 32782430 (-)
ENSDARG00000068567	shha	7: 40884012 ~ 40893295 (+)
ENSDARG00000075831	slc7a8a	7: 24208611 ~ 24236364 (-)
ENSDARG00000012030	dnaaf1	7: 29012033 ~ 29017892 (+)
ENSDARG00000015793	creb3l1	7: 38897836 ~ 38954874 (+)
ENSDARG00000030463	tppp3	7: 35229645 ~ 35243976 (+)
ENSDARG00000036427	slc3a2a	7: 20524064 ~ 20530447 (+)
ENSDARG00000103211	si:dkey-19b23.8	7: 20600674 ~ 20611039 (-)
ENSDARG00000069463	alox12	7: 26029672 ~ 26047946 (+)
ENSDARG00000056795	serpine1	7: 26265584 ~ 26270014 (-)
ENSDARG00000060035	rnf32	7: 40715756 ~ 40738774 (-)
ENSDARG00000103021	fadd	7: 54313489 ~ 54320088 (-)
ENSDARG00000093783	si:dkey-70b23.2	5: 67662430 ~ 67664578 (+)
ENSDARG00000089769	hapln1a	5: 46490622 ~ 46505702 (-)
ENSDARG00000002216	tbx3a	5: 72316803 ~ 72324371 (-)
ENSDARG00000028346	tesca	5: 11840905 ~ 11864424 (+)
ENSDARG00000075714	si:dkey-27p23.3	5: 57901168 ~ 57920600 (-)
ENSDARG00000051957	selenom	5: 69278089 ~ 69287567 (+)
ENSDARG00000094173	BX927282.1	5: 27039024 ~ 27047864 (-)
ENSDARG00000067606	rsph4a	5: 61919217 ~ 61930860 (+)
ENSDARG00000004392	hdr	5: 27404946 ~ 27415081 (+)
ENSDARG00000044074	loxl2b	5: 27434601 ~ 27490499 (+)
ENSDARG00000099042	cfap157	5: 65157576 ~ 65171706 (+)
ENSDARG00000035682	FP102018.1	5: 37517800 ~ 37585469 (+)
ENSDARG00000055160	chadla	3: 25108968 ~ 25119839 (-)
ENSDARG00000022531	ntn1b	3: 25708549 ~ 25814097 (-)
ENSDARG00000006786	copz2	3: 24094581 ~ 24111412 (+)
ENSDARG00000038139	pdgfbb	3: 24275597 ~ 24297419 (+)
ENSDARG00000088711	lgals1l1	3: 28939759 ~ 28946756 (+)
ENSDARG00000054942	lgals2a	3: 28953274 ~ 28961518 (+)
ENSDARG00000037961	rcn3	3: 32535986 ~ 32541072 (-)
ENSDARG00000058140	ttc25	3: 17910569 ~ 17928233 (+)
ENSDARG00000020235	sept9a	3: 34452336 ~ 34586403 (-)
ENSDARG00000098294	col5a3a	3: 53773256 ~ 53919463 (+)
ENSDARG00000101919	foxj1a	3: 60716904 ~ 60733722 (+)
ENSDARG00000040912	kdelr3	3: 162315 ~ 180860 (-)
ENSDARG00000015947	matn4	6: 52790049 ~ 52846194 (+)
ENSDARG00000101679	cfap52	6: 19667619 ~ 19683406 (-)
ENSDARG00000078781	si:ch211-161c3.6	6: 53373498 ~ 53391727 (-)
ENSDARG00000062978	ccdc151	6: 8250382 ~ 8264751 (-)
ENSDARG00000063009	catip	6: 13039951 ~ 13045541 (+)
ENSDARG00000096905	si:ch73-23l24.1	6: 15250672 ~ 15259419 (+)
ENSDARG00000037000	fkbp11	6: 7428613 ~ 7439490 (-)
ENSDARG00000057276	iqca1	6: 15762647 ~ 15893049 (+)
ENSDARG00000070743	tmem45a	6: 36821621 ~ 36837536 (+)
ENSDARG00000071196	cavin2b	6: 8707812 ~ 8736766 (-)
ENSDARG00000014545	golim4b	2: 36701322 ~ 36721289 (+)
ENSDARG00000076904	loxl5b	2: 56012016 ~ 56041890 (+)
ENSDARG00000103370	lrrc8da	2: 22495274 ~ 22502251 (+)
ENSDARG00000038612	pih1d3	2: 44400770 ~ 44406125 (-)
ENSDARG00000001721	oc90	2: 42942552 ~ 42960353 (-)
ENSDARG00000078299	si:ch211-13f8.2	2: 7213146 ~ 7236294 (+)
ENSDARG00000103545	tctex1d1	2: 14207559 ~ 14272083 (-)
ENSDARG00000092383	snorc	2: 48182604 ~ 48196092 (-)
ENSDARG00000038867	shhb	2: 30050541 ~ 30055432 (-)
ENSDARG00000039098	ca8	2: 21855036 ~ 21878527 (+)
ENSDARG00000001913	palmda	2: 20406399 ~ 20428140 (+)
ENSDARG00000086957	si:dkeyp-118a3.2	1: 19303241 ~ 19331532 (+)
ENSDARG00000004246	slit2	1: 23783349 ~ 23912788 (+)
ENSDARG00000051975	cd99	1: 33353174 ~ 33380340 (-)
ENSDARG00000058270	NA	1: 58013076 ~ 58036509 (-)
ENSDARG00000008287	fam114a1	1: 18575747 ~ 18592068 (-)
ENSDARG00000037647	rnf175	1: 10037444 ~ 10048514 (-)
ENSDARG00000067781	urp2	1: 1599979 ~ 1614500 (+)
ENSDARG00000077928	ccdc173	9: 48219111 ~ 48231775 (+)
ENSDARG00000077403	col8a1a	9: 30090656 ~ 30102778 (+)
ENSDARG00000079575	aff3	9: 21490822 ~ 21507083 (-)
ENSDARG00000000002	ccdc80	9: 34089156 ~ 34113209 (+)
ENSDARG00000010318	srpx	9: 30294073 ~ 30316790 (+)
ENSDARG00000078266	twist2	9: 45839260 ~ 45843479 (+)
ENSDARG00000042282	itga6a	9: 3429662 ~ 3486488 (+)
ENSDARG00000100133	cnmd	9: 53725128 ~ 53744243 (+)
ENSDARG00000099014	fxyd1	16: 45202602 ~ 45225520 (-)
ENSDARG00000040159	wnt4b	16: 31802203 ~ 31813018 (+)
ENSDARG00000069815	dnali1	16: 33925743 ~ 33930759 (-)
ENSDARG00000040944	ntd5	16: 13568697 ~ 13595027 (-)
ENSDARG00000099572	hmgn2	16: 51180938 ~ 51184126 (+)
ENSDARG00000040291	cadm4	16: 24213078 ~ 24518040 (-)
ENSDARG00000040118	zgc:113232	16: 38360002 ~ 38389883 (+)
ENSDARG00000021913	ak9	20: 33708318 ~ 33737831 (+)
ENSDARG00000042934	ccn2a	20: 25340814 ~ 25343490 (+)
ENSDARG00000042936	fam228a	20: 25350435 ~ 25355985 (+)
ENSDARG00000039577	ptk2bb	20: 19827379 ~ 19864131 (-)
ENSDARG00000029036	rab32a	20: 32009271 ~ 32045182 (-)
ENSDARG00000010434	clu	20: 39260475 ~ 39273987 (-)
ENSDARG00000068365	lmx1bb	8: 33258580 ~ 33381913 (-)
ENSDARG00000053133	b3gnt7l	8: 22289320 ~ 22290886 (+)
ENSDARG00000058940	si:ch211-248e11.2	8: 11542852 ~ 11550273 (-)
ENSDARG00000036630	plp2	8: 49310785 ~ 49345388 (-)
ENSDARG00000034457	si:ch211-163l21.7	8: 23781028 ~ 23783633 (-)
ENSDARG00000059746	plod1a	8: 47850073 ~ 47895817 (+)
ENSDARG00000053575	gpat2	8: 41035230 ~ 41173369 (+)
ENSDARG00000069093	col2a1a	8: 21195420 ~ 21219473 (+)
ENSDARG00000078052	emilin3a	8: 22962690 ~ 22965916 (-)
ENSDARG00000062487	si:dkey-6n6.1	8: 14130245 ~ 14151051 (-)
ENSDARG00000074323	efcab2	17: 11500628 ~ 11505070 (+)
ENSDARG00000003411	foxa2	17: 42565998 ~ 42568498 (-)
ENSDARG00000102138	foxa1	17: 10318071 ~ 10320932 (+)
ENSDARG00000071082	p4ha1b	17: 20144626 ~ 20167236 (-)
ENSDARG00000097485	cfap99	17: 43595692 ~ 43613566 (+)
ENSDARG00000070670	crip2	17: 37445525 ~ 37474689 (-)
ENSDARG00000007697	fabp7a	17: 15433518 ~ 15435887 (+)
ENSDARG00000087556	pacrg	17: 27545183 ~ 27706743 (+)
ENSDARG00000001937	LO018422.1	17: 48433817 ~ 48458789 (+)
ENSDARG00000034268	slit3	14: 24491818 ~ 24761161 (-)
ENSDARG00000076557	bicc2	14: 2941797 ~ 2979878 (-)
ENSDARG00000041617	nme5	14: 6954579 ~ 6961746 (+)
ENSDARG00000087094	foxa	14: 33973146 ~ 33981544 (-)
ENSDARG00000098158	cpxm1b	14: 52323322 ~ 52354463 (+)
ENSDARG00000099859	CR383676.1	14: 45631180 ~ 45631235 (-)
ENSDARG00000039563	loxl3b	13: 15234521 ~ 15404571 (+)
ENSDARG00000069265	matn3b	13: 32627444 ~ 32635885 (-)
ENSDARG00000020541	ism1	13: 34765141 ~ 34793487 (-)
ENSDARG00000034423	sncga	13: 22659153 ~ 22673166 (+)
ENSDARG00000031483	col9a1b	13: 39119460 ~ 39160018 (-)
ENSDARG00000074745	zmp:0000000760	13: 1726953 ~ 1786145 (+)
ENSDARG00000093781	lrriq1	18: 16192083 ~ 16218370 (+)
ENSDARG00000054864	aplp2	18: 44364530 ~ 44527124 (-)
ENSDARG00000021462	daw1	18: 46382484 ~ 46394080 (+)
ENSDARG00000040362	ehd2b	18: 44649804 ~ 44663244 (+)
ENSDARG00000068103	cfap45	18: 35173683 ~ 35197599 (+)
ENSDARG00000058939	b4galnt3b	18: 6558146 ~ 6619842 (+)
ENSDARG00000093381	tgm2l	18: 18803539 ~ 18850302 (-)
ENSDARG00000054451	loxl1	18: 50124297 ~ 50152689 (-)
ENSDARG00000103959	pak1	18: 3169579 ~ 3286769 (+)
ENSDARG00000074160	paqr4b	12: 13164706 ~ 13176918 (+)
ENSDARG00000060457	pmp22b	12: 37275336 ~ 37299671 (-)
ENSDARG00000088290	foxj1b	12: 20149305 ~ 20157014 (+)
ENSDARG00000045071	chad	12: 26512569 ~ 26525699 (+)
ENSDARG00000055128	armc4	12: 23026760 ~ 23129458 (-)
ENSDARG00000056600	papss2b	12: 17458949 ~ 17479078 (-)
ENSDARG00000045129	fkbp10b	12: 13905286 ~ 13957037 (+)
ENSDARG00000055527	cmn	12: 13118540 ~ 13164249 (+)
ENSDARG00000067831	tbata	12: 47907277 ~ 47929058 (+)
ENSDARG00000106669	CABZ01068358.1	12: 45493054 ~ 45502193 (-)
ENSDARG00000078997	dclk3	19: 42938754 ~ 42945965 (-)
ENSDARG00000101576	tbxta	19: 14187540 ~ 14191592 (-)
ENSDARG00000011797	tent5bb	19: 14573998 ~ 14588414 (+)
ENSDARG00000005023	fkbp9	19: 42591150 ~ 42607451 (-)
ENSDARG00000088277	susd5	19: 42629535 ~ 42651615 (-)
ENSDARG00000024492	col9a2	19: 38422059 ~ 38467554 (+)
ENSDARG00000012422	col11a2	19: 7179740 ~ 7225206 (-)
ENSDARG00000077497	igsf10	15: 1086656 ~ 1107108 (+)
ENSDARG00000019949	serpinh1b	15: 29382454 ~ 29388012 (-)
ENSDARG00000014018	lhx1a	15: 27703409 ~ 27710575 (-)
ENSDARG00000097102	si:ch73-281n10.2	15: 5898410 ~ 5901514 (-)
ENSDARG00000015822	sesn3	15: 35043007 ~ 35092735 (+)
ENSDARG00000103720	zgc:162730	15: 13984879 ~ 13986761 (+)
ENSDARG00000070868	cfap126	23: 19977120 ~ 19981813 (+)
ENSDARG00000077341	ppp1r14c	23: 39807857 ~ 39849155 (-)
ENSDARG00000077881	chl1a	23: 11285662 ~ 11452312 (+)
ENSDARG00000037845	col9a3	23: 495514 ~ 524780 (-)
ENSDARG00000116713	si:ch73-265d7.2	23: 44633858 ~ 44642913 (+)
ENSDARG00000076317	plod3	23: 44843860 ~ 44879214 (-)
ENSDARG00000038123	myl9a	23: 42810055 ~ 42823356 (+)
ENSDARG00000055655	birc5b	23: 28322986 ~ 28325846 (+)
ENSDARG00000058358	krt8	23: 10249626 ~ 10254288 (-)
ENSDARG00000018404	krt18a.1	23: 10347851 ~ 10351754 (+)
ENSDARG00000023062	ccn1	23: 45456490 ~ 45465320 (+)
ENSDARG00000089578	xrra1	21: 21782331 ~ 21791098 (-)
ENSDARG00000010085	p4ha2	21: 43097798 ~ 43131752 (-)
ENSDARG00000044975	krt94	11: 11468566 ~ 11471857 (-)
ENSDARG00000077082	agtrap	11: 16040517 ~ 16064291 (+)
ENSDARG00000062222	mxra8a	11: 24429923 ~ 24458786 (-)
ENSDARG00000100968	si:ch211-1a19.3	11: 13629528 ~ 13640471 (+)
ENSDARG00000071212	p3h1	11: 39075613 ~ 39105253 (-)
ENSDARG00000086826	sult6b1	11: 43375326 ~ 43388063 (+)
ENSDARG00000076120	foxp4	11: 21910343 ~ 22094392 (+)
ENSDARG00000076532	si:ch211-222l21.1	11: 40677616 ~ 40696136 (-)
ENSDARG00000015010	ccdc114	11: 40713723 ~ 40728380 (-)
ENSDARG00000090297	ldlrad2	11: 36477481 ~ 36489816 (+)
ENSDARG00000011407	col2a1b	11: 32007 ~ 55224 (-)
ENSDARG00000053130	pcp4a	10: 38969429 ~ 39011514 (-)
ENSDARG00000103919	si:ch73-1a9.3	10: 39084354 ~ 39087854 (+)
ENSDARG00000056653	fhl1b	10: 26597990 ~ 26621189 (+)
ENSDARG00000014058	rab36	10: 17223681 ~ 17232372 (-)
ENSDARG00000044261	si:ch211-243g18.2	10: 9550419 ~ 9571012 (+)
ENSDARG00000021697	morn3	10: 41926888 ~ 41940302 (-)
ENSDARG00000044010	loxl2a	10: 20407888 ~ 20445549 (-)
ENSDARG00000074708	armc3	24: 17048078 ~ 17067284 (-)
ENSDARG00000058011	arxa	24: 23936829 ~ 23942722 (-)
ENSDARG00000059362	cavin1b	24: 7631797 ~ 7668158 (+)
ENSDARG00000094422	si:dkey-12l12.1	24: 11334733 ~ 11346871 (+)
ENSDARG00000020158	spag6	24: 17269849 ~ 17279904 (+)
ENSDARG00000043066	nog2	24: 38814734 ~ 38816725 (-)
ENSDARG00000011821	plod2	24: 5237709 ~ 5314707 (+)
ENSDARG00000026165	col11a1a	24: 28764021 ~ 28893303 (-)
ENSDARG00000010008	vim	24: 32176155 ~ 32192681 (+)
ENSDARG00000013976	anxa13	24: 6360423 ~ 6375774 (-)
ENSDARG00000031248	enkur	24: 6673200 ~ 6678640 (-)
ENSDARG00000041703	rrbp1b	22: 25086567 ~ 25137256 (+)
ENSDARG00000099446	slit1b	22: 34843282 ~ 34937464 (-)
ENSDARG00000099266	vasna	22: 25814941 ~ 25845945 (+)
ENSDARG00000023694	spon1b	25: 15647750 ~ 15800834 (+)
ENSDARG00000005485	ucmab	25: 7982979 ~ 7988936 (+)
ENSDARG00000052000	cav2	25: 18556588 ~ 18561795 (+)
ENSDARG00000103747	cav1	25: 18563476 ~ 18577586 (+)
ENSDARG00000075177	ribc2	25: 16747475 ~ 16755340 (-)
ENSDARG00000033307	igf2b	25: 24039364 ~ 24046870 (-)
ENSDARG00000061345	wwp2	25: 34748125 ~ 34805144 (+)
--	cfap77	--
--	efcab10	--
--	nrgnb	--
--	rsph1	--
--	si:ch211-262i1.2	--
--	si:ch211-57h10.1	--
--	si:dkey-71b5.6.1	--
--	si:dkeyp-122d12.1	--
--	ccdc39	--
--	ctgfa	--
--	cyr61l2	--
--	emilin3	--
--	hfe2	--
--	rock2b.1	--
--	si:ch211-155m12.5	--
--	si:ch211-244b2.2	--
--	si:dkey-148f10.4	--
--	si:rp71-1p14.7	--
--	her15.1.1	--
--	ltbp3	--
--	pskh2	--
--	ta	--
--	mtss1l	--
--	si:ch73-173m3.3	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Floor plate.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
GSE106587 (WT)	Danio rerio	embryo	17	Floor plate	baseline	12hpf, 6 somites, wild-type TLAB embryo	ENSDARG00000068567 (shha)	marker	DOI:10.1126/science.aar3131
PRJNA564810 (1dpf)	Danio rerio	embryo	23	Floor plate	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	ENSDARG00000031483 (col9a1b)	marker	DOI:10.1093/g3journal/jkac062
GSE158142 (14hpf)	Danio rerio	head	13	Floor plate	baseline	14hpf, 10 somites, untreatment	ENSDARG00000054942 (lgals2a)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (14hpf)	Danio rerio	head	13	Floor plate	baseline	14hpf, 10 somites, untreatment	ENSDARG00000021462 (daw1)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (16hpf)	Danio rerio	head	17	Floor plate	baseline	16hpf, 14 somites, untreatment	ENSDARG00000024492 (col9a2)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (16hpf)	Danio rerio	head	17	Floor plate	baseline	16hpf, 14 somites, untreatment	ENSDARG00000067831 (tbata)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (16hpf)	Danio rerio	head	17	Floor plate	baseline	16hpf, 14 somites, untreatment	ENSDARG00000023694 (spon1b)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (18hpf)	Danio rerio	head	16	Floor plate	baseline	18hpf, 18 somites, untreatment	ENSDARG00000031483 (col9a1b)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (18hpf)	Danio rerio	head	16	Floor plate	baseline	18hpf, 18 somites, untreatment	ENSDARG00000023694 (spon1b)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (18hpf)	Danio rerio	head	16	Floor plate	baseline	18hpf, 18 somites, untreatment	ENSDARG00000038867 (shhb)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (18hpf)	Danio rerio	head	16	Floor plate	baseline	18hpf, 18 somites, untreatment	ENSDARG00000076904 (loxl5b)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (18hpf)	Danio rerio	head	16	Floor plate	baseline	18hpf, 18 somites, untreatment	ENSDARG00000021462 (daw1)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (20hpf)	Danio rerio	head	10	Floor plate	baseline	20hpf, 21-22 somites, untreatment	ENSDARG00000038867 (shhb)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (20hpf)	Danio rerio	head	10	Floor plate	baseline	20hpf, 21-22 somites, untreatment	ENSDARG00000031483 (col9a1b)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (20hpf)	Danio rerio	head	10	Floor plate	baseline	20hpf, 21-22 somites, untreatment	ENSDARG00000101919 (foxj1a)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE152982 (wild type)	Danio rerio	trunk	13	Floor plate	baseline	1.25dpf, untreatment	-- (ctgfa)	marker	DOI:10.1371/journal.pone.0254024
GSE152982 (wild type)	Danio rerio	trunk	13	Floor plate	baseline	1.25dpf, untreatment	ENSDARG00000040159 (wnt4b)	marker	DOI:10.1371/journal.pone.0254024

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

CELL TYPE: Floor plate

Distribution of Floor plate in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences