Symbol | Location | Gene type | Genome version | Species |
---|---|---|---|---|
col2a1a | 8: 21195420 ~ 21219473 (+) | protein_coding | GRCz11 | Danio rerio |
Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
---|---|---|---|---|---|---|---|
GSE151354 (wild type) | cartilage | baseline | 21dpf, wild type |
Chondrocytes (cluster: 1) Chondrocytes (cluster: 3) Chondrocyte-S-phase (cluster: 8) |
marker marker marker |
DOI:10.7554/eLife.16415 DOI:10.7554/eLife.16415 DOI:10.7554/eLife.16415 |
|
GSE151354 (nkx3.2 mutant) | cartilage | growth | 21dpf, nkx3.2 mutant |
Chondrocytes (cluster: 1) Chondrocyte-mitosis (cluster: 8) Chondrocyte-S-phase (cluster: 9) |
marker marker marker |
DOI:10.7554/eLife.16415 DOI:10.7554/eLife.16415 DOI:10.7554/eLife.16415 |
|
PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Fibroblasts (cluster: 16) |
marker |
DOI:10.1016/j.cell.2008.01.025 |
|
PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Fibroblasts (cluster: 14) |
marker |
DOI:10.1016/j.cell.2008.01.025 |
|
PRJNA640816 (2.9dpf) | embryo | baseline | 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells |
Melanoma cells (cluster: 2) |
marker |
DOI:10.7554/eLife.60005 |
|
GSE106587 (WT) | embryo | baseline | 12hpf, 6 somites, wild-type TLAB embryo |
Endoderm (cluster: 10) |
potential marker |
NA |
|
GSE126647 (Pbx4-depleted) | embryo | growth | 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells | ||||
PRJNA656271 (24hpf) | embryo | baseline | 24hpf, FACS-isolated EGFP+ cells | ||||
PRJNA656271 (2dpf) | embryo | baseline | 2dpf, FACS-isolated EGFP+ cells | ||||
PRJNA640816 (2dpf) | embryo | baseline | 2dpf, FACS isolated -4.9sox10:EGFP+ cells |
Otic (cluster: 10) |
potential marker |
NA |
|
PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development |
Chondrocytes (cluster: 6) |
potential marker |
NA |
|
PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development |
Cranial neural crest (cluster: 27) Chondrocytes (cluster: 5) |
potential marker potential marker |
NA NA |
|
PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development |
Floor plate (cluster: 23) |
potential marker |
NA |
|
GSE158142 (16hpf) | head | baseline | 16hpf, 14 somites, untreatment |
Pharyngeal endoderm (cluster: 10) |
potential marker |
NA |
|
GSE158142 (1.5dpf) | head | baseline | 1.5dpf, untreatment |
Chondrocytes (cluster: 7) |
potential marker |
NA |
|
GSE158142 (2dpf) | head | baseline | 2dpf, untreatment |
Chondrocytes (cluster: 6) |
potential marker |
NA |
|
GSE158142 (3dpf) | head | baseline | 3dpf, untreatment |
Chondrocytes (cluster: 5) |
potential marker |
NA |
|
GSE150498 (untreated ctrl) | intestine | baseline | 6dpf, untreated ctrl |
Chondrocytes (cluster: 2) |
potential marker |
NA |
|
GSE150498 (DSS treated) | intestine | disease | 6dpf, DSS treated |
Chondrocytes (cluster: 13) |
potential marker |
NA |
|
GSE150498 (wildtype, 1X DSS) | intestine | disease | 6dpf, wildtype, 1X DSS |
Chondrocytes (cluster: 7) |
potential marker |
NA |
|
GSE150498 (nod2-|-, 1X DSS) | intestine | disease | 6dpf, nod2-/-, 1X DSS |
Chondrocytes (cluster: 15) |
potential marker |
NA |
|
GSE122680 (3dpf) | retina | baseline | 3dpf, WT, untreatment | ||||
GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment |
Floor plate (cluster: 13) Notochord (cluster: 15) |
potential marker potential marker |
NA NA |
|
GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells |
Chondrocranium cells (cluster: 10) Chondrocytes (cluster: 16) Pronephros (cluster: 28) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE158099 (WT) | whole body | baseline | 2.5dpf, cd41:GFPlow-WT |
Chondrocytes (cluster: 3) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 2.5dpf, cd41:GFPlow-runx1-/- |
Chondrocytes (cluster: 2) |
potential marker |
NA |
|
GSE158099 (WT) | whole body | baseline | 6dpf, cd41:GFPlow-WT |
Neuron (cluster: 12) |
potential marker |
NA |
|
PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish | ||||
PRJNA415636 (brain) | brain | baseline | adult, Zebrabow M, brain | ||||
GSE158142 (15dpf) | brain, eye | baseline | 15dpf, untreatment | ||||
GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment | ||||
GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment | ||||
GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ | ||||
GSE144944 (fgfr3 -|-) | cranial vault | growth | 1mpf, fgfr3 -/- | ||||
GSE173972 (WT, ezh1+|+) | embryo | baseline | 1.25dpf, Kdrl-positive embryos | ||||
PRJNA706197 (18hpf) | embryo | baseline | 18hpf, FACS sorted sox10:nEOS cells | ||||
PRJNA706197 (20hpf) | embryo | baseline | 20hpf, FACS sorted sox10:nEOS cells | ||||
GSE173972 (HET, ezh1+|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos | ||||
GSE106587 (MZoep mutant) | embryo | baseline | 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo | ||||
GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos | ||||
PRJNA656271 (1.5dpf) | embryo | baseline | 1.5dpf, FACS-isolated EGFP+ cells | ||||
PRJNA706197 (24hpf) | embryo | baseline | 24hpf, FACS sorted sox10:nEOS cells | ||||
PRJNA706197 (12hpf) | embryo | baseline | 12hpf, FACS sorted sox10:nEOS cells | ||||
GSE173972 (KO, ezh1-|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos | ||||
GSE126647 (control) | embryo | baseline | 1.17dpf, control nkx2.5:ZsYellow+ cells | ||||
PRJNA706197 (1.25dpf) | embryo | baseline | 1.25dpf, FACS sorted sox10:nEOS cells | ||||
PRJNA706197 (14hpf) | embryo | baseline | 14hpf, FACS sorted sox10:nEOS cells | ||||
GSE158142 (24hpf) | head | baseline | 24hpf, untreatment | ||||
GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment | ||||
GSE158142 (12hpf) | head | baseline | 12hpf, 6 somites, untreatment | ||||
GSE158142 (20hpf) | head | baseline | 20hpf, 21-22 somites, untreatment | ||||
GSE158142 (14hpf) | head | baseline | 14hpf, 10 somites, untreatment | ||||
PRJNA754013 (zebrafish) | hypothalamus | baseline | adult, male, female, untreatment | ||||
GSE150498 (wildtype, 2X DSS+BZA) | intestine | disease | 6dpf, wildtype, 2X DSS+BZA | ||||
GSE150498 (nod2-|-, 2X DSS) | intestine | disease | 6dpf, nod2-/-, 2X DSS | ||||
GSE150498 (nod2-|-, 2X DSS+BZA) | intestine | disease | 6dpf, nod2-/-, 2X DSS+BZA | ||||
PRJNA605021 (hair cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae | ||||
PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae | ||||
PRJNA668529 (3d) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 days | ||||
PRJNA668529 (3h) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 hours | ||||
PRJNA668529 (control) | olfactory rosette | baseline | 3mpf, intranasal PBS | ||||
GSE148591 (3mpf) | pituitary | transplant | 3mpf, graft transplantation during early embryogenesis | ||||
PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet | ||||
GSE175929 (5mpf) | retina | baseline | 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg | ||||
PRJNA672101 (nrl-KO) | retina | growth | 5mpf, three retinas from nrl-KO zebrafsih | ||||
GSE122680 (14dpf) | retina | baseline | 14dpf, WT, untreatment | ||||
GSE122680 (24hpf) | retina | baseline | 24hpf, WT, untreatment | ||||
PRJNA672101 (WT) | retina | baseline | 5mpf, three retinas from WT zebrafsih | ||||
GSE122680 (2dpf) | retina | baseline | 2dpf, WT, untreatment | ||||
GSE122680 (1.5dpf) | retina | baseline | 1.5dpf, WT, untreatment | ||||
PRJNA551501 (2mpf) | thyroid gland | baseline | 2mpf, Tg(tg:mVenus-T2A-NTR) | ||||
PRJNA551501 (8mpf) | thyroid gland | baseline | 8mpf, Tg(tg:mVenus-T2A-NTR) | ||||
GSE163907 (24hpf) | trunk | baseline | 24hpf, trunk tg(sox10:GFP) positive cells | ||||
GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone | ||||
GSE158099 (WT) | whole body | baseline | 16dpf, cd41:GFPlow-WT | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 6dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 10dpf, cd41:GFPlow-runx1-/- |