DATASET ID: GSE158142 (12hpf)


Basic information


Tissue / Organ head
Experiment type baseline
Sample 12hpf, 6 somites, untreatment
Source dataset ID GSM4793185
Project ID GSE158142
Species Danio rerio

Clustering Result


Function


  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.
  • Marker Relationship


    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Hindbrain rhombomere ENSDARG00000023031 (hoxa2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    1 Hindbrain rhombomere -- (cyp26c1.1) -- marker DOI:10.1016/j.neuron.2020.09.023
    1 Hindbrain rhombomere ENSDARG00000101076 (irx3a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Midbrain -- (eng2a) -- marker DOI:10.1016/j.neuron.2020.09.023
    2 Midbrain ENSDARG00000008796 (her5) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Midbrain ENSDARG00000002707 (her11) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Midbrain -- (eng2b) -- marker DOI:10.1016/j.neuron.2020.09.023
    2 Midbrain ENSDARG00000062478 (ackr3a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Midbrain ENSDARG00000006911 (wnt8b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Midbrain ENSDARG00000068213 (fzd10) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Midbrain ENSDARG00000076571 (sp5a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Optic vesicle ENSDARG00000040321 (rx2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Optic vesicle ENSDARG00000000588 (grasp) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Optic vesicle ENSDARG00000007941 (hmx4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Optic vesicle ENSDARG00000056979 (lhx9) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Diencephalon ENSDARG00000057936 (lhx5) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Diencephalon ENSDARG00000104107 (nkx2.4b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Diencephalon ENSDARG00000038867 (shhb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Placode ENSDARG00000019516 (sp7) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Placode ENSDARG00000044356 (tp63) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Placode ENSDARG00000004539 (ptgs2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Placode ENSDARG00000111106 (arl3l1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Mesoderm ENSDARG00000040815 (tsku) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Mesoderm ENSDARG00000055398 (foxc1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Mesoderm ENSDARG00000012060 (thbs3b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Mesoderm ENSDARG00000056913 (pcolcea) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Heart primordium ENSDARG00000037995 (gdf3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Heart primordium ENSDARG00000055630 (foxh1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Neural crest ENSDARG00000062262 (ednrab) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Neural crest ENSDARG00000021032 (foxd3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Epidermal cells ENSDARG00000054616 (cldni) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Epidermal cells ENSDARG00000012016 (hpgd) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Epidermal cells ENSDARG00000088717 (ecrg4b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Epidermal cells ENSDARG00000103590 (cyp2aa6) unprocessed_pseudogene marker DOI:10.1016/j.neuron.2020.09.023
    10 Epidermal cells ENSDARG00000079964 (dlx2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Epidermal cells ENSDARG00000094752 (rpe65b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Epidermal cells ENSDARG00000045887 (mmp30) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Placode -- (ptchd3) -- marker DOI:10.1016/j.neuron.2020.09.023
    11 Placode ENSDARG00000015879 (pax8) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Placode ENSDARG00000019516 (sp7) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Telencephalon ENSDARG00000070769 (foxg1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Telencephalon ENSDARG00000022531 (ntn1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Neuron ENSDARG00000003469 (neurod4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Neuron ENSDARG00000056175 (scrt2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Neuron ENSDARG00000086327 (srrm4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Prechordal plate,polsterq -- (ctslb.1) -- marker DOI:10.1016/j.neuron.2020.09.023
    14 Prechordal plate,polsterq -- (he1b) -- marker DOI:10.1016/j.neuron.2020.09.023
    15 Notochord ENSDARG00000078052 (emilin3a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Notochord ENSDARG00000076904 (loxl5b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Notochord -- (hfe2) -- marker DOI:10.1016/j.neuron.2020.09.023
    16 Adaxial cells ENSDARG00000006526 (fn1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Adaxial cells ENSDARG00000007277 (myf5) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Adaxial cells ENSDARG00000028213 (ttn.2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Adaxial cells ENSDARG00000000563 (ttn.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Adaxial cells ENSDARG00000035958 (tnni2b.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Adaxial cells ENSDARG00000030110 (myod1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Adaxial cells ENSDARG00000099197 (actc1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Periderm cells ENSDARG00000055046 (ponzr5) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Periderm cells ENSDARG00000055514 (icn2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Periderm cells ENSDARG00000100185 (elovl7b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Periderm cells ENSDARG00000103917 (znf185) protein_coding marker DOI:10.1016/j.neuron.2020.09.023

    Expression



    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)