Fish Single-cell RNA Database

CELL TYPE: Hindbrain rhombomere

Distribution of Hindbrain rhombomere in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000045836	mapk11	4: 5506946 ~ 5522437 (+)
ENSDARG00000006409	mapk12b	4: 5523690 ~ 5530441 (+)
ENSDARG00000045898	si:ch211-152c2.3	4: 842010 ~ 845033 (+)
ENSDARG00000016363	her8a	7: 26429941 ~ 26436480 (-)
ENSDARG00000103316	si:ch211-212k18.5	7: 19552381 ~ 19558842 (+)
ENSDARG00000101076	irx3a	7: 36035432 ~ 36048078 (+)
ENSDARG00000058369	mex3b	7: 12061787 ~ 12065668 (-)
ENSDARG00000042277	efnb3b	7: 20965880 ~ 21089475 (+)
ENSDARG00000098153	lhfpl2b	5: 51739181 ~ 51756210 (-)
ENSDARG00000016904	bckdk	5: 61508418 ~ 61554010 (+)
ENSDARG00000041065	hspb1	5: 3568016 ~ 3584815 (-)
ENSDARG00000010770	sox19a	5: 24199180 ~ 24201437 (-)
ENSDARG00000067984	gas1b	5: 32360336 ~ 32363372 (-)
ENSDARG00000035563	znf703	5: 24329983 ~ 24333684 (-)
ENSDARG00000029263	hoxb3a	3: 23697997 ~ 23771945 (+)
ENSDARG00000019507	mcm5	3: 25999477 ~ 26011440 (+)
ENSDARG00000037879	lfng	3: 41917499 ~ 41926869 (+)
ENSDARG00000034893	rarab	3: 33065613 ~ 33259621 (-)
ENSDARG00000057683	mcm6	6: 12968101 ~ 12985390 (+)
ENSDARG00000039208	nasp	6: 33911154 ~ 33916788 (-)
ENSDARG00000060115	lrrn1	6: 43076516 ~ 43092175 (-)
ENSDARG00000021113	ptmaa	6: 29754141 ~ 29795029 (+)
ENSDARG00000060041	lig1	2: 44301276 ~ 44344321 (-)
ENSDARG00000039196	greb1l	2: 11685742 ~ 11833356 (+)
ENSDARG00000101766	ptmab	2: 5131964 ~ 5135125 (-)
ENSDARG00000029722	hmgb2a	1: 38169512 ~ 38171787 (-)
ENSDARG00000015554	zic2a	9: 31282161 ~ 31287010 (+)
ENSDARG00000077620	cdca7a	9: 2879763 ~ 2892250 (-)
ENSDARG00000077777	tmsb4x	9: 54178475 ~ 54180059 (+)
ENSDARG00000098802	map7d1a	16: 35661331 ~ 35776074 (+)
ENSDARG00000073978	crabp2a	16: 14383479 ~ 14397003 (-)
ENSDARG00000075593	trim71	16: 7742658 ~ 7793457 (-)
ENSDARG00000009823	pou3f1	16: 33593116 ~ 33595985 (+)
ENSDARG00000023031	hoxa2b	16: 20926673 ~ 20929183 (+)
ENSDARG00000037997	tubb5	16: 10318893 ~ 10327620 (+)
ENSDARG00000099572	hmgn2	16: 51180938 ~ 51184126 (+)
ENSDARG00000037188	rpa2	16: 4746588 ~ 4770233 (-)
ENSDARG00000024204	mcm3	20: 34770197 ~ 34783743 (+)
ENSDARG00000070434	rhov	20: 28364742 ~ 28368137 (+)
ENSDARG00000077694	dtnba	20: 47290004 ~ 47348161 (-)
ENSDARG00000014685	esco2	20: 39344889 ~ 39359154 (+)
ENSDARG00000076857	her3	8: 46641314 ~ 46642556 (+)
ENSDARG00000031495	seta	8: 2585256 ~ 2591654 (-)
ENSDARG00000043716	cldn5a	8: 4697764 ~ 4699320 (+)
ENSDARG00000008803	marcksb	17: 15534815 ~ 15539701 (+)
ENSDARG00000100558	slbp	14: 14841685 ~ 14846166 (+)
ENSDARG00000103732	plp1a	14: 14577246 ~ 14596699 (+)
ENSDARG00000053569	sox3	14: 32742701 ~ 32744464 (-)
ENSDARG00000007960	hnrnpaba	14: 6962271 ~ 6968589 (+)
ENSDARG00000052856	khdrbs1a	13: 45009957 ~ 45022527 (-)
ENSDARG00000057738	hells	13: 8255106 ~ 8270718 (+)
ENSDARG00000037116	cxcl12a	13: 30804367 ~ 30819715 (+)
ENSDARG00000105687	CABZ01070258.1	18: 49282063 ~ 49359785 (+)
ENSDARG00000042826	egr2b	12: 8483838 ~ 8504278 (-)
ENSDARG00000056783	raraa	12: 10952794 ~ 11157237 (+)
ENSDARG00000070959	si:ch211-288g17.3	19: 9455218 ~ 9460322 (+)
ENSDARG00000023290	fabp3	19: 42955280 ~ 42993306 (+)
ENSDARG00000034956	myclb	19: 30805513 ~ 30811161 (-)
ENSDARG00000056594	irx1b	19: 28127654 ~ 28130658 (-)
ENSDARG00000002613	rpa3	19: 25465025 ~ 25467185 (+)
ENSDARG00000035715	marcksl1b	19: 29798064 ~ 29800812 (+)
ENSDARG00000035957	gmnn	19: 31541607 ~ 31592425 (+)
ENSDARG00000100825	calm3a	15: 9234052 ~ 9272328 (-)
ENSDARG00000058538	alcamb	15: 19838458 ~ 19878987 (+)
ENSDARG00000017673	nova2	15: 28685625 ~ 28766824 (+)
ENSDARG00000078748	si:ch211-137a8.4	15: 29085955 ~ 29091807 (+)
ENSDARG00000032963	her12	23: 21444922 ~ 21446985 (-)
ENSDARG00000056732	her4.1	23: 21452557 ~ 21453614 (-)
ENSDARG00000009822	her4.4	23: 21462021 ~ 21463788 (-)
ENSDARG00000070770	her4.3	23: 21459263 ~ 21461140 (+)
ENSDARG00000056729	her4.2	23: 21469203 ~ 21471022 (-)
ENSDARG00000028335	hmga1a	23: 3751451 ~ 3759692 (-)
ENSDARG00000055216	tuba1c	23: 35690657 ~ 35694461 (-)
ENSDARG00000001889	tuba1a	23: 35708730 ~ 35711398 (+)
ENSDARG00000053990	hmgb2b	23: 45025909 ~ 45029559 (+)
ENSDARG00000020811	efemp2b	21: 25588436 ~ 25604609 (-)
ENSDARG00000014017	rrm1	21: 30772043 ~ 30787414 (-)
ENSDARG00000009942	cdc6	11: 11781973 ~ 11792766 (-)
ENSDARG00000076532	si:ch211-222l21.1	11: 40677616 ~ 40696136 (-)
ENSDARG00000054560	her15.2	11: 41994287 ~ 41996957 (-)
ENSDARG00000038205	her2	11: 41966117 ~ 41966854 (-)
ENSDARG00000054562	her15.1	11: 41981959 ~ 41984487 (+)
ENSDARG00000054155	pcna	10: 40821804 ~ 40826657 (-)
ENSDARG00000027088	ptgdsb.1	24: 17027310 ~ 17029374 (-)
ENSDARG00000071626	ptgdsb.2	24: 17021513 ~ 17023392 (-)
ENSDARG00000011404	fen1	24: 11908480 ~ 11921184 (+)
ENSDARG00000040041	mcm4	24: 35536664 ~ 35561672 (-)
ENSDARG00000102798	mcm2	22: 5632029 ~ 5655680 (-)
ENSDARG00000020708	mdkb	25: 7872135 ~ 7880878 (+)
--	kiaa0101	--
--	rrm2.1	--
--	zgc:92066	--
--	cyp26c1.1	--
--	her4.2.1	--
--	hoxa3a	--
--	id1.1	--
--	meis2b	--
--	si:ch211-193l2.3	--
--	si:ch211-193l2.4	--
--	si:ch211-193l2.5	--
--	si:ch211-193l2.6	--
--	si:ch211-193l2.7	--
--	si:ch211-193l2.8	--
--	whsc1	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Hindbrain rhombomere.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
GSE158142 (12hpf)	Danio rerio	head	1	Hindbrain rhombomere	baseline	12hpf, 6 somites, untreatment	ENSDARG00000023031 (hoxa2b)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (12hpf)	Danio rerio	head	1	Hindbrain rhombomere	baseline	12hpf, 6 somites, untreatment	-- (cyp26c1.1)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (12hpf)	Danio rerio	head	1	Hindbrain rhombomere	baseline	12hpf, 6 somites, untreatment	ENSDARG00000101076 (irx3a)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (16hpf)	Danio rerio	head	1	Hindbrain rhombomere	baseline	16hpf, 14 somites, untreatment	ENSDARG00000038205 (her2)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (16hpf)	Danio rerio	head	1	Hindbrain rhombomere	baseline	16hpf, 14 somites, untreatment	ENSDARG00000056732 (her4.1)	marker	DOI:10.1016/j.neuron.2020.09.023

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Hindbrain rhombomere

Distribution of Hindbrain rhombomere in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences