GENE ID: ENSDARG00000053990


Symbol Location Gene type Genome version Species
hmgb2b 23: 45025909 ~ 45029559 (+) protein_coding GRCz11 Danio rerio

  • PPI (protein-protein interaction) results are shown above.
  • Green is ENSDARG00000053990 (hmgb2b), yellow represents other genes.
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  • MARKER



    EXPRESSION


    Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
    PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Progenitors (cluster: 12)
    Progenitors (cluster: 16)
    Progenitors (cluster: 8)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain Radial glia (cluster: 3)
    potential marker
    NA
    GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment Progenitors (cluster: 3)
    potential marker
    NA
    GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment Progenitors (cluster: 3)
    Progenitors (cluster: 7)
    potential marker
    potential marker
    NA
    NA
    GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment Progenitors (cluster: 4)
    potential marker
    NA
    PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. HSPCs (cluster: 2)
    Endothelium (cluster: 5)
    potential marker
    potential marker
    NA
    NA
    PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Endothelium (cluster: 5)
    HSPCs (cluster: 8)
    potential marker
    potential marker
    NA
    NA
    GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/-
    GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry Immune cells (cluster: 6)
    potential marker
    NA
    GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos Neuron (cluster: 2)
    potential marker
    NA
    GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Neuron (cluster: 5)
    potential marker
    NA
    GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Neuron (cluster: 2)
    potential marker
    NA
    GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo
    GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells
    PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells
    PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells PMN progenitors (cluster: 1)
    potential marker
    NA
    PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells
    GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos Ionocyte progenitors (cluster: 6)
    potential marker
    NA
    PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
    PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Neuron (cluster: 2)
    Neuron (cluster: 3)
    potential marker
    potential marker
    NA
    NA
    PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Neuroblast (cluster: 3)
    Neuron (cluster: 4)
    Cranial neural crest (cluster: 6)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Neuroblast (cluster: 1)
    Neuron (cluster: 4)
    potential marker
    potential marker
    NA
    NA
    GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum Proliferating cells (cluster: 5)
    Proliferating cells (cluster: 7)
    potential marker
    potential marker
    NA
    NA
    GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment Hindbrain rhombomere (cluster: 1)
    potential marker
    NA
    GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment Cycling progenitors (cluster: 1)
    Cycling progenitors (cluster: 2)
    potential marker
    potential marker
    NA
    NA
    GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment Progenitors (cluster: 1)
    Progenitors (cluster: 2)
    potential marker
    potential marker
    NA
    NA
    GSE158142 (24hpf) head baseline 24hpf, untreatment Progenitors (cluster: 1)
    potential marker
    NA
    GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Retina neuroblasts (cluster: 6)
    Progenitors (cluster: 9)
    potential marker
    potential marker
    NA
    NA
    GSE158142 (3dpf) head baseline 3dpf, untreatment Neuron (cluster: 3)
    potential marker
    NA
    PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury Fibroblasts (cluster: 7)
    Macrophages (cluster: 9)
    potential marker
    potential marker
    NA
    NA
    PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury Macrophages (cluster: 9)
    potential marker
    NA
    GSE123241 (wild type) neuromast baseline 5dpf, wild type during sensory hair cell regeneration, lateral line sensory Hair cells (cluster: 5)
    potential marker
    NA
    GSE123241 (fgf3 mutants) neuromast regeneration 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory Hair cells (cluster: 4)
    potential marker
    NA
    GSE123241 (fgf3 siblings) neuromast regeneration 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory Hair cells (cluster: 4)
    potential marker
    NA
    PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days Neuron (cluster: 3)
    Neuronal precursor cells (cluster: 6)
    potential marker
    potential marker
    NA
    NA
    PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours Neuron (cluster: 6)
    potential marker
    NA
    GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment Retinal progenitors (cluster: 1)
    potential marker
    NA
    GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment Retinal progenitors (cluster: 1)
    Bipolar cells (cluster: 5)
    potential marker
    potential marker
    NA
    NA
    GSE122680 (3dpf) retina baseline 3dpf, WT, untreatment Retinal progenitors (cluster: 1)
    potential marker
    NA
    GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment Amacrine cells (cluster: 1)
    Bipolar cells (cluster: 2)
    potential marker
    potential marker
    NA
    NA
    GSE122680 (2dpf) retina baseline 2dpf, WT, untreatment Retinal progenitors (cluster: 3)
    Retinal progenitors (cluster: 4)
    Retinal progenitors (cluster: 6)
    Retinal progenitors (cluster: 3)
    Retinal progenitors (cluster: 4)
    Retinal progenitors (cluster: 6)
    potential marker
    potential marker
    potential marker
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    NA
    NA
    NA
    GSE152982 (wild type) trunk baseline 1.25dpf, untreatment Spinal cord (cluster: 2)
    Fibroblasts (cluster: 5)
    Lateral mesoderm (cluster: 7)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone Proliferating progenitors (cluster: 14)
    potential marker
    NA
    GSE159709 (melanoma) tumor disease adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells Interface (cluster: 2)
    potential marker
    NA
    PRJNA641144 (P_INV) tumor disease adult, ZMEL1-INV cells in vivo primary tumors Melanoma cells (cluster: 3)
    Melanoma cells (cluster: 4)
    potential marker
    potential marker
    NA
    NA
    PRJNA641144 (P_PRO) tumor disease adult, ZMEL1-PRO cells in vivo primary tumors Melanoma cells (cluster: 2)
    potential marker
    NA
    PRJNA641144 (M_INV) tumor disease adult, ZMEL1-INV cells in vivo metastases Melanoma cells (cluster: 5)
    potential marker
    NA
    PRJNA641144 (M_PRO) tumor disease adult, ZMEL1-PRO cells in vivo metastases Melanoma cells (cluster: 3)
    potential marker
    NA
    PRJNA641144 (D_INV) tumor disease adult, ZMEL1-INV cells in vitro individual culture Melanoma cells (cluster: 3)
    Melanoma cells (cluster: 4)
    potential marker
    potential marker
    NA
    NA
    PRJNA641144 (D_PRO) tumor disease adult, ZMEL1-PRO cells in vitro individual culture Melanoma cells (cluster: 2)
    Melanoma cells (cluster: 3)
    potential marker
    potential marker
    NA
    NA
    PRJNA641144 (C_INV) tumor disease adult, ZMEL1-INV cells in vitro co-culture Melanoma cells (cluster: 3)
    Melanoma cells (cluster: 4)
    potential marker
    potential marker
    NA
    NA
    PRJNA641144 (C_PRO) tumor disease adult, ZMEL1-PRO cells in vitro co-culture Melanoma cells (cluster: 2)
    Melanoma cells (cluster: 4)
    potential marker
    potential marker
    NA
    NA
    GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells Proliferating cells (cluster: 13)
    potential marker
    NA
    GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT Multipotent cells (cluster: 5)
    potential marker
    NA
    GSE158099 (WT) whole body baseline 6dpf, cd41:GFPlow-WT Multipotent cells (cluster: 8)
    potential marker
    NA
    GSE158099 (WT) whole body baseline 10dpf, cd41:GFPlow-WT Multipotent cells (cluster: 4)
    potential marker
    NA
    GSE158099 (runx1 -|-) whole body hematopoietic 10dpf, cd41:GFPlow-runx1-/- Multipotent cells (cluster: 2)
    potential marker
    NA
    GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT Multipotent cells (cluster: 6)
    potential marker
    NA
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- Neutrophils (cluster: 3)
    potential marker
    NA
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- HSPCs (cluster: 5)
    Multipotent cells (cluster: 7)
    potential marker
    potential marker
    NA
    NA
    GSE151354 (wild type) cartilage baseline 21dpf, wild type
    GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant
    GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+
    PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells
    PRJNA706197 (14hpf) embryo baseline 14hpf, FACS sorted sox10:nEOS cells
    PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
    PRJNA734348 (shield, dnmt1) embryo growth 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)