DATASET ID: GSE150498 (nod2-|-, 1X DSS)

Basic information

Tissue / Organ intestine
Experiment type disease
Sample 6dpf, nod2-/-, 1X DSS
Source dataset ID GSM4878625
Project ID GSE150498
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Mesenchymal cells ENSDARG00000093303 (ifitm1) protein_coding marker DOI:10.1038/s41586-021-03484-5
    2 Enterocytes ENSDARG00000012076 (apoa1a) protein_coding marker DOI:10.1038/s41586-021-03484-5
    3 Ionocytes ENSDARG00000060622 (si:ch73-14h1.2) protein_coding marker DOI:10.1038/s41586-021-03484-5
    4 Epithelial cells ENSDARG00000040045 (cldn1) protein_coding marker DOI:10.1038/s41586-021-03484-5
    5 Enteroendocrine -- (zgc:153845) -- marker DOI:10.1038/s41586-021-03484-5
    6 Proliferative myeloid + ILC ENSDARG00000026350 (wasb) protein_coding marker DOI:10.1038/s41586-021-03484-5
    7 Smooth muscle cells ENSDARG00000030980 (csrp1b) protein_coding marker DOI:10.1038/s41586-021-03484-5
    7 Smooth muscle cells ENSDARG00000086391 (cald1b) protein_coding marker DOI:10.1038/s41586-021-03484-5
    8 Epithelial cells ENSDARG00000097725 (si:dkey-96g2.1) protein_coding marker DOI:10.1038/s41586-021-03484-5
    9 Epithelial cells ENSDARG00000043128 (cldne) protein_coding marker DOI:10.1038/s41586-021-03484-5
    10 Enteroendocrine + ILC3 ENSDARG00000004015 (adcyap1a) protein_coding marker DOI:10.1038/s41586-021-03484-5
    11 Hepatocytes ENSDARG00000102456 (cfhl4) protein_coding marker DOI:10.1038/s41586-021-03484-5
    12 Squamous epithelial ENSDARG00000014488 (ca2) protein_coding marker DOI:10.1038/s41586-021-03484-5
    13 Stromal ENSDARG00000034588 (scn4ab) protein_coding marker DOI:10.1038/s41586-021-03484-5
    14 Endothelium ENSDARG00000105215 (kdrl) protein_coding marker DOI:10.1038/s41586-021-03484-5
    15 Chondrocytes ENSDARG00000093381 (tgm2l) protein_coding marker DOI:10.1038/s41586-021-03484-5
    15 Chondrocytes ENSDARG00000059391 (gyg1b) protein_coding marker DOI:10.1038/s41586-021-03484-5

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)