Fish Single-cell RNA Database

CELL TYPE: Enteroendocrine + ILC3

Distribution of Enteroendocrine + ILC3 in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000045673	il22	4: 13544595 ~ 13548806 (-)
ENSDARG00000063299	pcloa	4: 11375894 ~ 11450040 (+)
ENSDARG00000104108	slco1d1	4: 77389668 ~ 77432218 (-)
ENSDARG00000030614	syt1a	4: 21129752 ~ 21315399 (+)
ENSDARG00000045574	lrmp	4: 17252596 ~ 17278928 (-)
ENSDARG00000103810	cacna2d4a	4: 20237461 ~ 20243021 (-)
ENSDARG00000018817	bdnf	7: 31924983 ~ 31941670 (-)
ENSDARG00000075800	calml4a	7: 34492744 ~ 34496196 (+)
ENSDARG00000004015	adcyap1a	7: 71547747 ~ 71556734 (+)
ENSDARG00000015349	mfge8a	7: 48788147 ~ 48805181 (-)
ENSDARG00000104815	lmx1ba	5: 5032833 ~ 5147336 (-)
ENSDARG00000011579	hoxb10a	3: 23669267 ~ 23671863 (+)
ENSDARG00000091834	si:ch211-198m17.1	3: 38705425 ~ 38745598 (-)
ENSDARG00000059690	slc29a4	3: 40315410 ~ 40349733 (+)
ENSDARG00000053449	pyya	3: 33340939 ~ 33344780 (+)
ENSDARG00000013750	eno1b	6: 40661703 ~ 40669406 (+)
ENSDARG00000103308	mst1	6: 53394125 ~ 53426773 (-)
ENSDARG00000040177	rgs16	6: 35443430 ~ 35446110 (-)
ENSDARG00000062744	scn1lab	6: 10248332 ~ 10320676 (-)
ENSDARG00000103390	cacna2d2a	6: 53503273 ~ 53885514 (-)
ENSDARG00000103226	dhcr7	2: 28648888 ~ 28682476 (-)
ENSDARG00000016081	cldn15la	2: 5508542 ~ 5517438 (-)
ENSDARG00000068745	map4l	2: 24177006 ~ 24252506 (+)
ENSDARG00000004869	penka	2: 11508691 ~ 11512819 (-)
ENSDARG00000010816	slc7a14a	2: 25860344 ~ 25990784 (+)
ENSDARG00000032317	tox	2: 21982911 ~ 22108108 (+)
ENSDARG00000055874	cpe	1: 20839482 ~ 20911297 (-)
ENSDARG00000069438	neurl1aa	1: 47701924 ~ 47771742 (-)
ENSDARG00000016301	zgc:65894	1: 56217388 ~ 56223913 (-)
ENSDARG00000087359	c3a.2	1: 56229674 ~ 56266731 (+)
ENSDARG00000024101	adra1d	1: 41957210 ~ 41982582 (-)
ENSDARG00000103951	tspan34	1: 57521361 ~ 57533548 (+)
ENSDARG00000019566	neurod1	9: 44291721 ~ 44295071 (-)
ENSDARG00000060280	pde9a	9: 19421841 ~ 19477248 (+)
ENSDARG00000058646	ptprna	9: 7548533 ~ 7619622 (+)
ENSDARG00000009242	fev	9: 11548233 ~ 11551608 (-)
ENSDARG00000090140	tmem196b	16: 19677484 ~ 19681282 (+)
ENSDARG00000011824	pbxip1b	16: 22750174 ~ 22775528 (-)
ENSDARG00000010936	abcb4	16: 28629242 ~ 28658341 (-)
ENSDARG00000009978	icn	16: 23431189 ~ 23432552 (+)
ENSDARG00000016494	ddc	16: 8298542 ~ 8342749 (-)
ENSDARG00000089399	tmem176l.2	16: 46639772 ~ 46645396 (-)
ENSDARG00000005112	cdh17	16: 26774182 ~ 26802798 (+)
ENSDARG00000101606	rims2a	16: 44338805 ~ 44399335 (-)
ENSDARG00000079175	si:ch211-79k12.1	16: 24522824 ~ 24550029 (-)
ENSDARG00000037859	il11a	16: 12611362 ~ 12617155 (+)
ENSDARG00000023952	fam167ab	20: 18740518 ~ 18760027 (+)
ENSDARG00000020609	snap25a	20: 34913069 ~ 34956230 (+)
ENSDARG00000043299	nmu	20: 22045089 ~ 22062715 (+)
ENSDARG00000022763	hpcal1	20: 31232923 ~ 31308805 (-)
ENSDARG00000034187	calm1b	20: 16743056 ~ 16775258 (+)
ENSDARG00000001154	rimbp2	8: 43941313 ~ 44015210 (-)
ENSDARG00000076170	pcsk1nl	8: 7359294 ~ 7379391 (+)
ENSDARG00000053301	insm1b	17: 41463942 ~ 41466145 (+)
ENSDARG00000079636	fam177a1	17: 13019499 ~ 13026634 (-)
ENSDARG00000071872	zdhhc15b	14: 10954345 ~ 10974650 (+)
ENSDARG00000039064	st3gal7	13: 40716319 ~ 40726865 (-)
ENSDARG00000012972	cfl1l	13: 33606739 ~ 33609427 (+)
ENSDARG00000039243	zgc:152791	13: 37617518 ~ 37620290 (-)
ENSDARG00000055305	ret	13: 25584556 ~ 25632756 (-)
ENSDARG00000079840	kcnma1a	13: 16521898 ~ 16886118 (+)
ENSDARG00000006497	rtn1a	13: 31424586 ~ 31470439 (-)
ENSDARG00000043814	st6galnac1.1	12: 20678187 ~ 20685624 (+)
ENSDARG00000096645	si:ch211-131k2.2	12: 5977777 ~ 5981577 (+)
ENSDARG00000096662	abcc3	12: 695619 ~ 786808 (+)
ENSDARG00000098662	si:ch73-359m17.9	19: 48308750 ~ 48312109 (-)
ENSDARG00000020798	necap1	19: 10396042 ~ 10408029 (+)
ENSDARG00000063088	si:dkey-211g8.6	19: 10611788 ~ 10612774 (-)
ENSDARG00000076280	ppp1r1b	19: 4912817 ~ 4962402 (+)
ENSDARG00000010728	scin	19: 31347675 ~ 31372896 (-)
ENSDARG00000040965	zgc:101731	15: 29123031 ~ 29138266 (+)
ENSDARG00000100825	calm3a	15: 9234052 ~ 9272328 (-)
ENSDARG00000097085	si:ch211-261a10.5	15: 9278992 ~ 9294929 (-)
ENSDARG00000100844	cldn15lb	15: 45563491 ~ 45590345 (+)
ENSDARG00000037030	casz1	23: 28954137 ~ 29004753 (-)
ENSDARG00000077799	egr4	23: 45579497 ~ 45581626 (+)
ENSDARG00000069503	cldnh	21: 25739295 ~ 25741411 (-)
ENSDARG00000034048	zgc:92275	21: 11415224 ~ 11434315 (+)
ENSDARG00000031246	hbegfb	21: 30161295 ~ 30168949 (-)
ENSDARG00000002600	pcsk1	21: 11684830 ~ 11722343 (+)
ENSDARG00000043661	cadpsa	11: 19780717 ~ 20040154 (+)
ENSDARG00000070229	zgc:158258	11: 37683278 ~ 37693019 (-)
ENSDARG00000036456	anxa4	10: 41159241 ~ 41192881 (+)
ENSDARG00000056653	fhl1b	10: 26597990 ~ 26621189 (+)
ENSDARG00000056877	vamp2	10: 22838364 ~ 22845485 (-)
ENSDARG00000057665	sprn2	10: 20635960 ~ 20637098 (-)
ENSDARG00000098686	tmprss2	10: 38708099 ~ 38729185 (+)
ENSDARG00000036577	atp6v0cb	24: 39158283 ~ 39175750 (+)
ENSDARG00000031875	trpa1b	24: 13635108 ~ 13715761 (+)
ENSDARG00000077982	elf3	22: 661505 ~ 665371 (+)
ENSDARG00000043180	gpd1b	22: 6996046 ~ 7006974 (-)
ENSDARG00000019341	gpc1a	22: 15507218 ~ 15548201 (+)
ENSDARG00000023694	spon1b	25: 15647750 ~ 15800834 (+)
ENSDARG00000059348	rxfp3.3b	25: 1304173 ~ 1305384 (+)
ENSDARG00000020708	mdkb	25: 7872135 ~ 7880878 (+)
ENSDARG00000039882	ap3s2	25: 10762016 ~ 10803532 (+)
ENSDARG00000097652	si:dkey-234i14.2	25: 37193052 ~ 37205061 (-)
ENSDARG00000116334	tmem17	25: 28589669 ~ 28593540 (+)
ENSDARG00000061416	c2cd4a	25: 32886143 ~ 32888115 (-)
ENSDARG00000100846	fgf21	KN149943.1: 8050 ~ 12380 (-)
--	cfi	--
--	fam46bb	--
--	gnaz	--
--	gyltl1b	--
--	mast4	--
--	si:dkey-208c12.2	--
--	zgc:123068	--
--	gabrb2	--
--	loc100330746	--
--	loc103909796	--
--	zgc:162928	--
--	scn1a	--
--	si:ch211-188i4.4	--
--	zgc:163022	--
--	loc100329375	--
--	loc100331278	--
--	loc100535694	--
--	loc101882633	--
--	rgs8.1	--
--	rhocb.1	--
--	si:ch211-137i24.10.1	--
--	si:ch211-197g18.2	--
--	sprn2.1	--
--	synpo	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Enteroendocrine + ILC3.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
GSE150498 (wildtype, untreated)	Danio rerio	intestine	4	Enteroendocrine + ILC3	baseline	6dpf, wildtype, untreated	ENSDARG00000004015 (adcyap1a)	marker	DOI:10.1038/s41586-021-03484-5
GSE150498 (nod2-\|-, untreated)	Danio rerio	intestine	6	Enteroendocrine + ILC3	disease	6dpf, nod2-/-, untreated	ENSDARG00000004015 (adcyap1a)	marker	DOI:10.1038/s41586-021-03484-5
GSE150498 (wildtype, 1X DSS)	Danio rerio	intestine	10	Enteroendocrine + ILC3	disease	6dpf, wildtype, 1X DSS	ENSDARG00000004015 (adcyap1a)	marker	DOI:10.1038/s41586-021-03484-5
GSE150498 (nod2-\|-, 1X DSS)	Danio rerio	intestine	10	Enteroendocrine + ILC3	disease	6dpf, nod2-/-, 1X DSS	ENSDARG00000004015 (adcyap1a)	marker	DOI:10.1038/s41586-021-03484-5
GSE150498 (wildtype, 2X DSS)	Danio rerio	intestine	7	Enteroendocrine + ILC3	disease	6dpf, wildtype, 2X DSS	ENSDARG00000004015 (adcyap1a)	marker	DOI:10.1038/s41586-021-03484-5
GSE150498 (wildtype, 2X DSS+BZA)	Danio rerio	intestine	8	Enteroendocrine + ILC3	disease	6dpf, wildtype, 2X DSS+BZA	ENSDARG00000004015 (adcyap1a)	marker	DOI:10.1038/s41586-021-03484-5
GSE150498 (nod2-\|-, 2X DSS)	Danio rerio	intestine	10	Enteroendocrine + ILC3	disease	6dpf, nod2-/-, 2X DSS	ENSDARG00000004015 (adcyap1a)	marker	DOI:10.1038/s41586-021-03484-5
GSE150498 (nod2-\|-, 2X DSS+BZA)	Danio rerio	intestine	10	Enteroendocrine + ILC3	disease	6dpf, nod2-/-, 2X DSS+BZA	ENSDARG00000004015 (adcyap1a)	marker	DOI:10.1038/s41586-021-03484-5

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Enteroendocrine + ILC3

Distribution of Enteroendocrine + ILC3 in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences