DATASET ID: GSE150498 (nod2-|-, 2X DSS)

Basic information

Tissue / Organ intestine
Experiment type disease
Sample 6dpf, nod2-/-, 2X DSS
Source dataset ID GSM4878630
Project ID GSE150498
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Mesenchymal cells ENSDARG00000093303 (ifitm1) protein_coding marker DOI:10.1038/s41586-021-03484-5
    2 Brush border cells ENSDARG00000103342 (wu:fa56d06) protein_coding marker DOI:10.1038/s41586-021-03484-5
    3 Squamous epithelial ENSDARG00000014488 (ca2) protein_coding marker DOI:10.1038/s41586-021-03484-5
    4 Chondrocytes ENSDARG00000093381 (tgm2l) protein_coding marker DOI:10.1038/s41586-021-03484-5
    4 Chondrocytes ENSDARG00000059391 (gyg1b) protein_coding marker DOI:10.1038/s41586-021-03484-5
    5 Proliferative myeloid + ILC ENSDARG00000026350 (wasb) protein_coding marker DOI:10.1038/s41586-021-03484-5
    6 Enteroendocrine -- (zgc:153845) -- marker DOI:10.1038/s41586-021-03484-5
    7 Fibroblasts ENSDARG00000044935 (hpdb) protein_coding marker DOI:10.1038/s41586-021-03484-5
    8 Epithelial cells ENSDARG00000092947 (cyt1) protein_coding marker DOI:10.1038/s41586-021-03484-5
    9 Pancreatic cells ENSDARG00000018263 (pdia2) protein_coding marker DOI:10.1038/s41586-021-03484-5
    10 Enteroendocrine + ILC3 ENSDARG00000004015 (adcyap1a) protein_coding marker DOI:10.1038/s41586-021-03484-5
    11 Stromal ENSDARG00000013266 (colec11) protein_coding marker DOI:10.1038/s41586-021-03484-5
    12 Endothelium ENSDARG00000105215 (kdrl) protein_coding marker DOI:10.1038/s41586-021-03484-5
    12 Endothelium ENSDARG00000014059 (cldn5b) protein_coding marker DOI:10.1038/s41586-021-03484-5
    14 Enteric neuron ENSDARG00000021143 (rtn1b) protein_coding marker DOI:10.1038/s41586-021-03484-5

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)