Fish Single-cell RNA Database

CELL TYPE: Mesenchymal cells

Distribution of Mesenchymal cells in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000043796	ms4a17a.7	4: 76705830 ~ 76718322 (+)
ENSDARG00000012066	dcn	4: 16368762 ~ 16412084 (-)
ENSDARG00000037960	lrrc17	4: 20141191 ~ 20156085 (-)
ENSDARG00000032765	net1	4: 11573568 ~ 11603149 (-)
ENSDARG00000011961	csrp2	4: 2511629 ~ 2525934 (-)
ENSDARG00000043802	ms4a17a.8	4: 76637548 ~ 76655373 (+)
ENSDARG00000069388	tmem88b	7: 21787507 ~ 21806454 (+)
ENSDARG00000087196	fibinb	7: 34290051 ~ 34293073 (+)
ENSDARG00000091234	si:ch73-335l21.4	7: 20239915 ~ 20241413 (-)
ENSDARG00000036080	cd81a	7: 32983440 ~ 33023404 (-)
ENSDARG00000077121	cyp26b1	7: 25323742 ~ 25348597 (+)
ENSDARG00000029500	rpl34	7: 59649399 ~ 59664545 (+)
ENSDARG00000017676	mmp2	7: 35410050 ~ 35432901 (-)
ENSDARG00000036036	mdka	7: 39166460 ~ 39178198 (+)
ENSDARG00000103211	si:dkey-19b23.8	7: 20600674 ~ 20611039 (-)
ENSDARG00000021442	cdh11	7: 43760149 ~ 43857938 (-)
ENSDARG00000014690	rps4x	7: 51633815 ~ 51639699 (-)
ENSDARG00000030176	zgc:92429	7: 23727768 ~ 23745984 (-)
ENSDARG00000019230	rpl7a	5: 33284144 ~ 33287691 (-)
ENSDARG00000026726	anxa1a	5: 25578181 ~ 25583325 (-)
ENSDARG00000009336	aif1l	5: 34549365 ~ 34575502 (+)
ENSDARG00000031891	tbx1	5: 15202495 ~ 15215483 (+)
ENSDARG00000093303	ifitm1	5: 33258289 ~ 33259079 (-)
ENSDARG00000045979	zgc:153704	5: 4482437 ~ 4493524 (-)
ENSDARG00000003599	rpl3	3: 29867213 ~ 29871364 (-)
ENSDARG00000086189	mgp	3: 1414870 ~ 1434135 (-)
ENSDARG00000053129	carhsp1	3: 27798094 ~ 27831815 (+)
ENSDARG00000104773	junbb	3: 7654655 ~ 7656059 (-)
ENSDARG00000038025	cbx7a	3: 24986145 ~ 24994617 (+)
ENSDARG00000102398	cnn1b	3: 14463941 ~ 14486959 (+)
ENSDARG00000014646	aoc2	3: 32924185 ~ 32934359 (-)
ENSDARG00000013307	rpl19	3: 16229911 ~ 16232442 (+)
ENSDARG00000077291	rps2	3: 18398876 ~ 18403179 (+)
ENSDARG00000105223	pmp22a	3: 50861176 ~ 50865079 (-)
ENSDARG00000025428	socs3a	3: 57423137 ~ 57425961 (-)
ENSDARG00000017624	krt4	6: 39308498 ~ 39313027 (-)
ENSDARG00000059906	sdc4	6: 52663097 ~ 52675630 (-)
ENSDARG00000015947	matn4	6: 52790049 ~ 52846194 (+)
ENSDARG00000074242	serbp1a	6: 34931597 ~ 34938746 (-)
ENSDARG00000002644	rgs5a	6: 35387367 ~ 35439406 (-)
ENSDARG00000104571	gadd45ab	6: 23931236 ~ 23939154 (+)
ENSDARG00000008494	myl6	6: 39874177 ~ 39893526 (-)
ENSDARG00000009782	myh11a	6: 8499865 ~ 8580858 (-)
ENSDARG00000004753	mylkb	6: 13458257 ~ 13498745 (-)
ENSDARG00000071113	xirp2a	6: 10170241 ~ 10233650 (-)
ENSDARG00000021113	ptmaa	6: 29754141 ~ 29795029 (+)
ENSDARG00000030980	csrp1b	6: 54838269 ~ 54845622 (-)
ENSDARG00000008030	myl9b	6: 1787160 ~ 1799561 (+)
ENSDARG00000013576	gadd45bb	2: 36939749 ~ 36941988 (+)
ENSDARG00000092383	snorc	2: 48182604 ~ 48196092 (-)
ENSDARG00000007320	rpl7	2: 30177476 ~ 30182353 (-)
ENSDARG00000005673	f3b	2: 15100742 ~ 15106968 (+)
ENSDARG00000092920	si:ch211-106h4.12	2: 31665836 ~ 31669111 (+)
ENSDARG00000026871	uchl1	1: 22647756 ~ 22652424 (-)
ENSDARG00000006526	fn1b	1: 5504128 ~ 5543065 (-)
ENSDARG00000051975	cd99	1: 33353174 ~ 33380340 (-)
ENSDARG00000078659	tmem176	1: 44935442 ~ 44940953 (-)
ENSDARG00000075045	cxcl18b	1: 49222164 ~ 49225890 (-)
ENSDARG00000074378	junba	1: 51732979 ~ 51734535 (-)
ENSDARG00000075282	irs2b	9: 8429239 ~ 8454060 (-)
ENSDARG00000055009	col4a1	9: 8634229 ~ 8670158 (-)
ENSDARG00000104110	col4a2	9: 8761099 ~ 8882901 (+)
ENSDARG00000042018	fhl2a	9: 6578580 ~ 6601988 (+)
ENSDARG00000093440	tnfaip6	9: 22764235 ~ 22779813 (+)
ENSDARG00000000002	ccdc80	9: 34089156 ~ 34113209 (+)
ENSDARG00000078266	twist2	9: 45839260 ~ 45843479 (+)
ENSDARG00000099148	bzw1b	9: 426392 ~ 433915 (+)
ENSDARG00000039576	fstl1b	9: 9735493 ~ 9842149 (-)
ENSDARG00000031678	col5a2a	9: 42653188 ~ 42696408 (-)
ENSDARG00000100133	cnmd	9: 53725128 ~ 53744243 (+)
ENSDARG00000025348	igfbp5b	9: 46820636 ~ 46842179 (-)
ENSDARG00000045958	egfl6	9: 54629993 ~ 54681473 (+)
ENSDARG00000029533	rpl18	16: 16969086 ~ 16991808 (+)
ENSDARG00000061242	tuft1a	16: 22363700 ~ 22385705 (-)
ENSDARG00000079752	col6a4a	16: 36650984 ~ 36719705 (+)
ENSDARG00000025254	s100a10b	16: 23397785 ~ 23399484 (+)
ENSDARG00000009978	icn	16: 23431189 ~ 23432552 (+)
ENSDARG00000104340	rspo1	16: 33772902 ~ 33817828 (-)
ENSDARG00000055475	rps27.2	16: 23788616 ~ 23800484 (-)
ENSDARG00000040944	ntd5	16: 13568697 ~ 13595027 (-)
ENSDARG00000055854	nr4a3	16: 27345383 ~ 27369782 (+)
ENSDARG00000097057	fxyd6l	16: 24601140 ~ 24642815 (-)
ENSDARG00000042566	rps7	20: 30372352 ~ 30377221 (-)
ENSDARG00000059933	plpp3	20: 7964356 ~ 8024582 (-)
ENSDARG00000020785	lama4	20: 218886 ~ 259965 (+)
ENSDARG00000042934	ccn2a	20: 25340814 ~ 25343490 (+)
ENSDARG00000043531	jun	20: 15552657 ~ 15554606 (+)
ENSDARG00000031683	fosab	20: 46552311 ~ 46554440 (-)
ENSDARG00000020133	jdp2b	20: 46586678 ~ 46595151 (+)
ENSDARG00000022650	cyp2ad3	20: 25548425 ~ 25551676 (-)
ENSDARG00000093549	selenop	8: 31435452 ~ 31443334 (+)
ENSDARG00000007275	si:ch211-251b21.1	8: 47633438 ~ 47665026 (+)
ENSDARG00000092035	si:ch211-156j16.1	8: 26818446 ~ 26838845 (+)
ENSDARG00000027582	angptl7	8: 46217861 ~ 46221296 (+)
ENSDARG00000053858	crip1	17: 37385811 ~ 37395496 (-)
ENSDARG00000055283	id2a	17: 34805897 ~ 34808165 (+)
ENSDARG00000027984	gstz1	17: 45106424 ~ 45114519 (+)
ENSDARG00000006456	pdgfrl	14: 30359124 ~ 30366196 (-)
ENSDARG00000053684	aldob	14: 21106444 ~ 21121199 (+)
ENSDARG00000037421	egr1	14: 21332522 ~ 21336385 (-)
ENSDARG00000019353	sparc	14: 25937948 ~ 25956860 (-)
ENSDARG00000100897	pdgfrb	14: 3186485 ~ 3268155 (-)
ENSDARG00000074869	si:ch1073-291c23.2	13: 337814 ~ 350108 (-)
ENSDARG00000058004	six2a	13: 10232695 ~ 10235565 (+)
ENSDARG00000039273	fbln5	13: 33155428 ~ 33170733 (-)
ENSDARG00000015399	foxf1	18: 30847237 ~ 30850365 (+)
ENSDARG00000068401	yap1	18: 37283765 ~ 37355666 (-)
ENSDARG00000068275	ptx3a	18: 41364437 ~ 41375120 (-)
ENSDARG00000026611	socs3b	12: 34258139 ~ 34277465 (+)
ENSDARG00000045180	acta2	12: 17100021 ~ 17116481 (+)
ENSDARG00000101199	rbp4	12: 5115929 ~ 5120339 (-)
ENSDARG00000035809	col1a1b	12: 3095699 ~ 3133483 (-)
ENSDARG00000014907	htra1b	12: 11388724 ~ 11457625 (-)
ENSDARG00000099101	gch2	12: 25085751 ~ 25092570 (+)
ENSDARG00000037618	ddit4	12: 48340133 ~ 48342259 (+)
ENSDARG00000030402	twist1a	19: 2229162 ~ 2231188 (-)
ENSDARG00000020007	col1a2	19: 40983221 ~ 41002980 (+)
ENSDARG00000100392	rps18	19: 18617608 ~ 18627025 (-)
ENSDARG00000036830	krt91	19: 5378563 ~ 5380770 (-)
ENSDARG00000019949	serpinh1b	15: 29382454 ~ 29388012 (-)
ENSDARG00000045408	tagln	15: 543744 ~ 551181 (-)
ENSDARG00000038123	myl9a	23: 42810055 ~ 42823356 (+)
ENSDARG00000062129	mxra8b	23: 29889089 ~ 29906163 (+)
ENSDARG00000023062	ccn1	23: 45456490 ~ 45465320 (+)
ENSDARG00000012593	col5a1	21: 6556635 ~ 6725780 (+)
ENSDARG00000089078	si:ch211-160j14.3	21: 32089491 ~ 32119965 (-)
ENSDARG00000020072	thbs4b	21: 5129513 ~ 5162687 (+)
ENSDARG00000110266	si:ch211-200p22.4	21: 30563115 ~ 30583086 (+)
ENSDARG00000013430	bhmt	21: 40408 ~ 45920 (-)
ENSDARG00000036840	krt15	11: 11515778 ~ 11518469 (-)
ENSDARG00000055053	itih1	11: 3630627 ~ 3647014 (-)
ENSDARG00000100968	si:ch211-1a19.3	11: 13629528 ~ 13640471 (+)
ENSDARG00000070873	ccl25b	11: 6259048 ~ 6265723 (-)
ENSDARG00000061436	col6a2	11: 33921358 ~ 33960318 (-)
ENSDARG00000074908	col6a1	11: 33996526 ~ 34065718 (-)
ENSDARG00000100795	timp4.3	11: 714386 ~ 718748 (+)
ENSDARG00000105389	mmel1	11: 40530748 ~ 40605868 (+)
ENSDARG00000056913	pcolcea	10: 22789319 ~ 22803854 (-)
ENSDARG00000068996	hist2h2l	10: 29815644 ~ 29816467 (-)
ENSDARG00000104682	tpm2	10: 6318227 ~ 6375394 (+)
ENSDARG00000009401	vcanb	10: 43188678 ~ 43263885 (+)
ENSDARG00000021938	smad9	10: 34960751 ~ 35002459 (-)
ENSDARG00000059391	gyg1b	24: 3307857 ~ 3326369 (+)
ENSDARG00000010244	rpl22l1	24: 26475182 ~ 26479841 (-)
ENSDARG00000010008	vim	24: 32176155 ~ 32192681 (+)
ENSDARG00000074335	boc	24: 21206243 ~ 21258945 (-)
ENSDARG00000087303	cebpd	24: 35564668 ~ 35565927 (+)
ENSDARG00000054818	rpl32	22: 31039091 ~ 31044066 (+)
ENSDARG00000071095	abi3bpb	22: 28446365 ~ 28482973 (+)
ENSDARG00000025670	fstl3	22: 18884971 ~ 18897231 (+)
ENSDARG00000027310	lsp1a	25: 31323970 ~ 31394515 (+)
ENSDARG00000045930	rbpms2a	25: 6122823 ~ 6153077 (+)
ENSDARG00000086391	cald1b	25: 20140926 ~ 20211831 (+)
ENSDARG00000003216	anxa2a	25: 34013093 ~ 34027440 (+)
ENSDARG00000097208	NA	25: 30298377 ~ 30299662 (+)
ENSDARG00000061345	wwp2	25: 34748125 ~ 34805144 (+)
ENSDARG00000087402	tpm1	25: 33192404 ~ 33250323 (+)
ENSDARG00000103775	thbs1a	KN150104.1: 1741 ~ 17962 (+)
ENSDARG00000099389	cdo1	KN149707.2: 4029 ~ 7435 (+)
--	cyr61	--
--	ier2	--
--	aoc2.1	--
--	loc100535731	--
--	loc100537860	--
--	loc108179332	--
--	loc110437990	--
--	si:dkey-239h2.3.1	--
--	zgc:77517.1	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Mesenchymal cells.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
PRJNA608912 (wt_unjuried)	Danio rerio	heart	5	Mesenchymal cells	baseline	5mpf, wild type, uninjured	ENSDARG00000027582 (angptl7)	marker	DOI:10.1186/s12862-016-0859-x, DOI:10.15252/embr.202152901
PRJNA608912 (wt_unjuried)	Danio rerio	heart	5	Mesenchymal cells	baseline	5mpf, wild type, uninjured	ENSDARG00000104340 (rspo1)	marker	DOI:10.1242/dev.068460, DOI:10.15252/embr.202152901
PRJNA608912 (wt_unjuried)	Danio rerio	heart	5	Mesenchymal cells	baseline	5mpf, wild type, uninjured	ENSDARG00000086189 (mgp)	marker	DOI:10.15252/embr.202152901
PRJNA608912 (wt_2dpi)	Danio rerio	heart	8	Mesenchymal cells	regeneration	5mpf, wild type, 2 days post injury	ENSDARG00000104340 (rspo1)	marker	DOI:10.1242/dev.068460, DOI:10.15252/embr.202152901
PRJNA608912 (wt_7dpi)	Danio rerio	heart	7	Mesenchymal cells	regeneration	5mpf, wild type, 7 days post injury	ENSDARG00000027582 (angptl7)	marker	DOI:10.1186/s12862-016-0859-x, DOI:10.15252/embr.202152901
PRJNA608912 (wt_7dpi)	Danio rerio	heart	7	Mesenchymal cells	regeneration	5mpf, wild type, 7 days post injury	ENSDARG00000104340 (rspo1)	marker	DOI:10.1242/dev.068460, DOI:10.15252/embr.202152901
PRJNA608912 (wt_7dpi)	Danio rerio	heart	7	Mesenchymal cells	regeneration	5mpf, wild type, 7 days post injury	ENSDARG00000086189 (mgp)	marker	DOI:10.15252/embr.202152901
PRJNA608912 (wt_14dpi)	Danio rerio	heart	8	Mesenchymal cells	regeneration	5mpf, wild type, 14 days post injury	ENSDARG00000027582 (angptl7)	marker	DOI:10.1186/s12862-016-0859-x, DOI:10.15252/embr.202152901
PRJNA608912 (wt_14dpi)	Danio rerio	heart	8	Mesenchymal cells	regeneration	5mpf, wild type, 14 days post injury	ENSDARG00000104340 (rspo1)	marker	DOI:10.1242/dev.068460, DOI:10.15252/embr.202152901
PRJNA608912 (wt_14dpi)	Danio rerio	heart	8	Mesenchymal cells	regeneration	5mpf, wild type, 14 days post injury	ENSDARG00000086189 (mgp)	marker	DOI:10.15252/embr.202152901
PRJNA608912 (kit_uninjuried)	Danio rerio	heart	11	Mesenchymal cells	regeneration	5mpf, kit mutant, uninjured	ENSDARG00000027582 (angptl7)	marker	DOI:10.1186/s12862-016-0859-x, DOI:10.15252/embr.202152901
PRJNA608912 (kit_uninjuried)	Danio rerio	heart	11	Mesenchymal cells	regeneration	5mpf, kit mutant, uninjured	ENSDARG00000104340 (rspo1)	marker	DOI:10.1242/dev.068460, DOI:10.15252/embr.202152901
PRJNA608912 (kit_uninjuried)	Danio rerio	heart	11	Mesenchymal cells	regeneration	5mpf, kit mutant, uninjured	ENSDARG00000086189 (mgp)	marker	DOI:10.15252/embr.202152901
PRJNA608912 (kit_2dpi)	Danio rerio	heart	6	Mesenchymal cells	regeneration	5mpf, kit mutant, 2 days post injury	ENSDARG00000027582 (angptl7)	marker	DOI:10.1186/s12862-016-0859-x, DOI:10.15252/embr.202152901
PRJNA608912 (kit_2dpi)	Danio rerio	heart	6	Mesenchymal cells	regeneration	5mpf, kit mutant, 2 days post injury	ENSDARG00000104340 (rspo1)	marker	DOI:10.1242/dev.068460, DOI:10.15252/embr.202152901
PRJNA608912 (kit_2dpi)	Danio rerio	heart	6	Mesenchymal cells	regeneration	5mpf, kit mutant, 2 days post injury	ENSDARG00000086189 (mgp)	marker	DOI:10.15252/embr.202152901
PRJNA608912 (kit_7dpi)	Danio rerio	heart	7	Mesenchymal cells	regeneration	5mpf, kit mutant, 7 days post injury	ENSDARG00000027582 (angptl7)	marker	DOI:10.1186/s12862-016-0859-x, DOI:10.15252/embr.202152901
PRJNA608912 (kit_7dpi)	Danio rerio	heart	7	Mesenchymal cells	regeneration	5mpf, kit mutant, 7 days post injury	ENSDARG00000104340 (rspo1)	marker	DOI:10.1242/dev.068460, DOI:10.15252/embr.202152901
PRJNA608912 (kit_7dpi)	Danio rerio	heart	7	Mesenchymal cells	regeneration	5mpf, kit mutant, 7 days post injury	ENSDARG00000086189 (mgp)	marker	DOI:10.15252/embr.202152901
PRJNA608912 (kit_14dpi)	Danio rerio	heart	8	Mesenchymal cells	regeneration	5mpf, kit mutant, 14 days post injury	ENSDARG00000027582 (angptl7)	marker	DOI:10.1186/s12862-016-0859-x, DOI:10.15252/embr.202152901
PRJNA608912 (kit_14dpi)	Danio rerio	heart	8	Mesenchymal cells	regeneration	5mpf, kit mutant, 14 days post injury	ENSDARG00000104340 (rspo1)	marker	DOI:10.1242/dev.068460, DOI:10.15252/embr.202152901
PRJNA608912 (kit_14dpi)	Danio rerio	heart	8	Mesenchymal cells	regeneration	5mpf, kit mutant, 14 days post injury	ENSDARG00000086189 (mgp)	marker	DOI:10.15252/embr.202152901
GSE150498 (DSS treated)	Danio rerio	intestine	3	Mesenchymal cells	disease	6dpf, DSS treated	ENSDARG00000093303 (ifitm1)	marker	DOI:10.1038/s41586-021-03484-5
GSE150498 (wildtype, untreated)	Danio rerio	intestine	2	Mesenchymal cells	baseline	6dpf, wildtype, untreated	ENSDARG00000093303 (ifitm1)	marker	DOI:10.1038/s41586-021-03484-5
GSE150498 (nod2-\|-, untreated)	Danio rerio	intestine	2	Mesenchymal cells	disease	6dpf, nod2-/-, untreated	ENSDARG00000093303 (ifitm1)	marker	DOI:10.1038/s41586-021-03484-5
GSE150498 (nod2-\|-, 1X DSS)	Danio rerio	intestine	1	Mesenchymal cells	disease	6dpf, nod2-/-, 1X DSS	ENSDARG00000093303 (ifitm1)	marker	DOI:10.1038/s41586-021-03484-5
GSE150498 (nod2-\|-, 2X DSS)	Danio rerio	intestine	1	Mesenchymal cells	disease	6dpf, nod2-/-, 2X DSS	ENSDARG00000093303 (ifitm1)	marker	DOI:10.1038/s41586-021-03484-5
GSE150498 (nod2-\|-, 2X DSS+BZA)	Danio rerio	intestine	4	Mesenchymal cells	disease	6dpf, nod2-/-, 2X DSS+BZA	ENSDARG00000093303 (ifitm1)	marker	DOI:10.1038/s41586-021-03484-5
GSE163907 (24hpf)	Danio rerio	trunk	9	Mesenchymal cells	baseline	24hpf, trunk tg(sox10:GFP) positive cells	ENSDARG00000100133 (cnmd)	marker	DOI:10.7554/eLife.66078

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Mesenchymal cells

Distribution of Mesenchymal cells in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

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