Symbol | Location | Gene type | Genome version | Species |
---|---|---|---|---|
aldob | 14: 21106444 ~ 21121199 (+) | protein_coding | GRCz11 | Danio rerio |
Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
---|---|---|---|---|---|---|---|
GSE137784 (no HCC) | liver | baseline | 6mpf, male, isolated from the CreLox zebrafish with HCC |
Hepatocytes (cluster: 4) |
marker |
DOI:10.1242/bio.047829 |
|
PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish |
Progenitors (cluster: 11) Endothelium (cluster: 15) Microglia (cluster: 18) Cranial ganglion (cluster: 22) |
potential marker potential marker potential marker potential marker |
NA NA NA NA |
|
GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment |
Chondrocytes (cluster: 4) |
potential marker |
NA |
|
GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment |
Eye (cluster: 17) Cornea (cluster: 9) |
potential marker potential marker |
NA NA |
|
PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Epithelial cells (cluster: 12) |
potential marker |
NA |
|
PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Epithelial cells (cluster: 15) |
potential marker |
NA |
|
GSE144944 (fgfr3 -|-) | cranial vault | growth | 1mpf, fgfr3 -/- |
Osteoblast (cluster: 1) Epidermal cells (cluster: 5) |
potential marker potential marker |
NA NA |
|
GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ |
Osteoblast (cluster: 1) Chondrocytes (cluster: 3) Epidermal cells (cluster: 7) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE130526 (fin) | dorsal and anal fin | baseline | adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry |
Epidermal cells (cluster: 3) |
potential marker |
NA |
|
GSE173972 (WT, ezh1+|+) | embryo | baseline | 1.25dpf, Kdrl-positive embryos |
Epithelial cells (cluster: 4) |
potential marker |
NA |
|
GSE173972 (HET, ezh1+|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos |
Epithelial cells (cluster: 4) |
potential marker |
NA |
|
GSE106587 (WT) | embryo | baseline | 12hpf, 6 somites, wild-type TLAB embryo |
Optic cup (cluster: 5) |
potential marker |
NA |
|
GSE106587 (MZoep mutant) | embryo | baseline | 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo |
Optic cup (cluster: 4) Optic cup (cluster: 7) |
potential marker potential marker |
NA NA |
|
PRJNA656271 (2dpf) | embryo | baseline | 2dpf, FACS-isolated EGFP+ cells | ||||
GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos |
NaR ionocytes (cluster: 11) Skin (cluster: 2) Ionocyte progenitors (cluster: 8) |
potential marker potential marker potential marker |
NA NA NA |
|
PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development |
Intesinal epithelial cells (cluster: 17) Hepatocytes (cluster: 19) Hepatocytes (cluster: 20) Periderm cells (cluster: 4) Chondrocytes (cluster: 6) |
potential marker potential marker potential marker potential marker potential marker |
NA NA NA NA NA |
|
PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development |
Epidermal cells (cluster: 13) Somites (cluster: 18) Optic vesicle (cluster: 22) Chondrocytes (cluster: 5) |
potential marker potential marker potential marker potential marker |
NA NA NA NA |
|
PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development |
Epidermal cells (cluster: 14) Neuroblast (cluster: 2) |
potential marker potential marker |
NA NA |
|
GSE161712 (M. marinum) | granulomas | disease | adult, infected with bacteria of M. marinum |
Epithelialized macrophages (cluster: 1) |
potential marker |
NA |
|
GSE158142 (12hpf) | head | baseline | 12hpf, 6 somites, untreatment |
Midbrain (cluster: 2) Optic vesicle (cluster: 3) |
potential marker potential marker |
NA NA |
|
GSE158142 (14hpf) | head | baseline | 14hpf, 10 somites, untreatment |
Optic vesicle (cluster: 4) |
potential marker |
NA |
|
GSE158142 (16hpf) | head | baseline | 16hpf, 14 somites, untreatment |
Optic vesicle (cluster: 4) |
potential marker |
NA |
|
GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment |
Optic vesicle (cluster: 6) |
potential marker |
NA |
|
GSE158142 (20hpf) | head | baseline | 20hpf, 21-22 somites, untreatment |
Optic vesicle (cluster: 4) |
potential marker |
NA |
|
GSE158142 (3dpf) | head | baseline | 3dpf, untreatment |
Periderm cells (cluster: 9) |
potential marker |
NA |
|
PRJNA608912 (wt_2dpi) | heart | regeneration | 5mpf, wild type, 2 days post injury |
Thrombocytes (cluster: 16) |
potential marker |
NA |
|
PRJNA608912 (wt_7dpi) | heart | regeneration | 5mpf, wild type, 7 days post injury |
Fibroblasts (cluster: 6) |
potential marker |
NA |
|
PRJNA608912 (wt_14dpi) | heart | regeneration | 5mpf, wild type, 14 days post injury |
Mesenchymal cells (cluster: 8) |
potential marker |
NA |
|
PRJNA608912 (kit_uninjuried) | heart | regeneration | 5mpf, kit mutant, uninjured |
Thrombocytes (cluster: 13) |
potential marker |
NA |
|
PRJNA608912 (kit_7dpi) | heart | regeneration | 5mpf, kit mutant, 7 days post injury | ||||
PRJNA608912 (kit_14dpi) | heart | regeneration | 5mpf, kit mutant, 14 days post injury |
Thrombocytes (cluster: 14) |
potential marker |
NA |
|
PRJNA415636 (heart, blood) | heart, blood | baseline | adult, Zebrabow M, heart and blood |
Apelin expressing cells (cluster: 10) |
potential marker |
NA |
|
PRJNA415636 (pancreas, liver) | hepatopancreas | baseline | adult, Zebrabow M, pancreas and liver |
Pancreas duct epithelial cells (cluster: 7) |
potential marker |
NA |
|
GSE150498 (untreated ctrl) | intestine | baseline | 6dpf, untreated ctrl |
Chondrocytes (cluster: 2) Enterocytes (cluster: 4) |
potential marker potential marker |
NA NA |
|
GSE150498 (DSS treated) | intestine | disease | 6dpf, DSS treated |
Enterocytes (cluster: 1) |
potential marker |
NA |
|
GSE150498 (nod2-|-, untreated) | intestine | disease | 6dpf, nod2-/-, untreated |
Brush border cells (cluster: 4) |
potential marker |
NA |
|
GSE150498 (wildtype, 1X DSS) | intestine | disease | 6dpf, wildtype, 1X DSS |
Brush border cells (cluster: 2) |
potential marker |
NA |
|
GSE150498 (nod2-|-, 1X DSS) | intestine | disease | 6dpf, nod2-/-, 1X DSS |
Enterocytes (cluster: 2) |
potential marker |
NA |
|
GSE150498 (wildtype, 2X DSS) | intestine | disease | 6dpf, wildtype, 2X DSS |
Enterocytes (cluster: 1) |
potential marker |
NA |
|
GSE150498 (wildtype, 2X DSS+BZA) | intestine | disease | 6dpf, wildtype, 2X DSS+BZA |
Brush border cells (cluster: 3) |
potential marker |
NA |
|
GSE150498 (nod2-|-, 2X DSS) | intestine | disease | 6dpf, nod2-/-, 2X DSS |
Brush border cells (cluster: 2) |
potential marker |
NA |
|
GSE150498 (nod2-|-, 2X DSS+BZA) | intestine | disease | 6dpf, nod2-/-, 2X DSS+BZA |
Brush border cells (cluster: 3) |
potential marker |
NA |
|
GSE137784 (HCC, HepABC) | liver | disease | 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC |
Hepatocytes (cluster: 2) |
potential marker |
NA |
|
GSE137784 (HCC, CreLox) | liver | disease | 6mpf, male, isolated from the zebrafish without HCC |
Hepatocytes (cluster: 2) Hepatocytes (cluster: 3) |
potential marker potential marker |
NA NA |
|
GSE123241 (wild type) | neuromast | baseline | 5dpf, wild type during sensory hair cell regeneration, lateral line sensory | ||||
PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae |
Support cells (cluster: 2) |
potential marker |
NA |
|
PRJNA605021 (hair cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae |
Support cells (cluster: 4) |
potential marker |
NA |
|
PRJNA668529 (3d) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 days |
Basal cells (cluster: 2) Endothelium (cluster: 7) |
potential marker potential marker |
NA NA |
|
PRJNA668529 (3h) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 hours |
Basal cells (cluster: 4) Endothelium (cluster: 7) |
potential marker potential marker |
NA NA |
|
PRJNA668529 (control) | olfactory rosette | baseline | 3mpf, intranasal PBS |
Endothelium (cluster: 7) |
potential marker |
NA |
|
PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet |
Pancreas duct epithelial cells (cluster: 7) |
potential marker |
NA |
|
GSE122680 (24hpf) | retina | baseline | 24hpf, WT, untreatment |
Retinal progenitors (cluster: 2) |
potential marker |
NA |
|
GSE122680 (1.5dpf) | retina | baseline | 1.5dpf, WT, untreatment |
Retinal progenitors (cluster: 2) |
potential marker |
NA |
|
PRJNA672101 (nrl-KO) | retina | growth | 5mpf, three retinas from nrl-KO zebrafsih |
RPE (cluster: 10) |
potential marker |
NA |
|
PRJNA551501 (2mpf) | thyroid gland | baseline | 2mpf, Tg(tg:mVenus-T2A-NTR) |
Stromal (cluster: 4) |
potential marker |
NA |
|
GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment |
Xanthophores (cluster: 11) |
potential marker |
NA |
|
GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone |
Xanthophores (cluster: 5) |
potential marker |
NA |
|
PRJNA641144 (M_INV) | tumor | disease | adult, ZMEL1-INV cells in vivo metastases |
Melanoma cells (cluster: 8) |
potential marker |
NA |
|
PRJNA641144 (M_PRO) | tumor | disease | adult, ZMEL1-PRO cells in vivo metastases |
Melanoma cells (cluster: 8) |
potential marker |
NA |
|
GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells |
Chondrocytes (cluster: 16) Epidermal cells (cluster: 7) Epidermal cells (cluster: 9) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE158099 (WT) | whole body | baseline | 2.5dpf, cd41:GFPlow-WT |
Chondrocytes (cluster: 3) Epithelial cells (cluster: 4) |
potential marker potential marker |
NA NA |
|
GSE158099 (WT) | whole body | baseline | 6dpf, cd41:GFPlow-WT |
Epithelial cells (cluster: 7) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- |
Epidermal cells (cluster: 8) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- |
Epidermal cells (cluster: 9) |