Fish Single-cell RNA Database

GENE ID: ENSDARG00000078318

Symbol	Location	Gene type	Genome version	Species
tmod1	1: 12231478 ~ 12257979 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000078318 (tmod1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045560	mybpc1	4: 17726841 ~ 17793152 (-)
ENSDARG00000006060	crybg1b	4: 861444 ~ 890220 (-)
ENSDARG00000015805	cgnl1	7: 52431747 ~ 52498175 (-)
ENSDARG00000001431	actn3b	7: 6969909 ~ 7133475 (+)
ENSDARG00000011615	mybpc3	7: 31838320 ~ 31899925 (+)
ENSDARG00000012944	myhz2	5: 32206378 ~ 32217579 (+)
ENSDARG00000067995	myhz1.2	5: 32281815 ~ 32293002 (-)
ENSDARG00000040650	gps1	3: 36234060 ~ 36246975 (-)
ENSDARG00000011998	bfsp2	2: 32761130 ~ 32769759 (-)
ENSDARG00000079564	myh7	2: 24252987 ~ 24270062 (-)
ENSDARG00000078318	tmod1	1: 12231478 ~ 12257979 (+)
ENSDARG00000000540	asdurf	9: 41079669 ~ 41090343 (-)
ENSDARG00000032630	neb	9: 22805138 ~ 22892838 (-)
ENSDARG00000020890	tmod4	16: 29650698 ~ 29684858 (+)
ENSDARG00000019253	rhag	20: 14014813 ~ 14054083 (-)
ENSDARG00000079687	rnf10	8: 41256612 ~ 41273768 (-)
ENSDARG00000031782	crybg1a	17: 25481466 ~ 25550249 (+)
ENSDARG00000017773	slc16a12a	17: 23578316 ~ 23596969 (+)
ENSDARG00000053684	aldob	14: 21106444 ~ 21121199 (+)
ENSDARG00000037337	cnrip1b	13: 1089942 ~ 1097017 (+)
ENSDARG00000074919	NA	13: 985442 ~ 992458 (-)
ENSDARG00000002571	tmod2	18: 39327010 ~ 39382869 (+)
ENSDARG00000091771	lysmd2	18: 39416357 ~ 39430956 (+)
ENSDARG00000053862	crygmx	12: 30838167 ~ 30841679 (-)
ENSDARG00000099283	epb41a	19: 13639486 ~ 13774502 (-)
ENSDARG00000095002	NA	23: 20408227 ~ 20420243 (+)
ENSDARG00000004363	lhfpl6	10: 31938796 ~ 32041846 (+)
ENSDARG00000057632	ppp1r42	24: 23730061 ~ 23740899 (+)
ENSDARG00000045592	tnni2a.1	25: 31222069 ~ 31236549 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	Differentiated art.CMs (cluster: 2)	potential marker	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Muscle cells (cluster: 16)	potential marker	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Skeletal muscle cells (cluster: 38)	potential marker	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000078318

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences