Fish Single-cell RNA Database

GENE ID: ENSDARG00000045592

Symbol	Location	Gene type	Genome version	Species
tnni2a.1	25: 31222069 ~ 31236549 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000045592 (tnni2a.1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045560	mybpc1	4: 17726841 ~ 17793152 (-)
ENSDARG00000045822	tnnt2e	4: 7508316 ~ 7544687 (+)
ENSDARG00000068457	tnnt3b	7: 39444843 ~ 39460363 (+)
ENSDARG00000035438	myhc4	5: 32221755 ~ 32233862 (+)
ENSDARG00000095930	myha	5: 32246872 ~ 32257316 (+)
ENSDARG00000067995	myhz1.2	5: 32281815 ~ 32293002 (-)
ENSDARG00000067990	myhz1.1	5: 32298624 ~ 32309129 (-)
ENSDARG00000068910	nos1	5: 12100126 ~ 12272689 (-)
ENSDARG00000037954	tnnt1	3: 32157140 ~ 32170878 (-)
ENSDARG00000011519	myl4	3: 22222244 ~ 22242868 (-)
ENSDARG00000054010	scaf1	3: 32477782 ~ 32490621 (+)
ENSDARG00000053254	mylpfa	3: 32813048 ~ 32818607 (-)
ENSDARG00000001993	myhb	6: 40745437 ~ 40756138 (-)
ENSDARG00000013144	atp1b1a	6: 29217392 ~ 29227487 (+)
ENSDARG00000078318	tmod1	1: 12231478 ~ 12257979 (+)
ENSDARG00000014196	myl1	9: 38994232 ~ 39005317 (-)
ENSDARG00000020890	tmod4	16: 29650698 ~ 29684858 (+)
ENSDARG00000056209	myoz1a	13: 22264914 ~ 22278415 (+)
ENSDARG00000002589	mylpfb	12: 15002757 ~ 15010996 (+)
ENSDARG00000011400	tnnc1a	23: 4890693 ~ 4895876 (+)
ENSDARG00000020610	tnnt2a	23: 5653224 ~ 5685172 (-)
ENSDARG00000095002	NA	23: 20408227 ~ 20420243 (+)
ENSDARG00000070835	tnnc2	23: 20422661 ~ 20427299 (+)
ENSDARG00000099203	atp1b2a	23: 44732863 ~ 44763861 (+)
ENSDARG00000055154	slc8a4a	21: 27047333 ~ 27185915 (-)
ENSDARG00000044975	krt94	11: 11468566 ~ 11471857 (-)
ENSDARG00000104682	tpm2	10: 6318227 ~ 6375394 (+)
ENSDARG00000015174	atp6v0a1b	24: 7596009 ~ 7632187 (-)
ENSDARG00000023963	tpm4a	22: 15577827 ~ 15602760 (-)
ENSDARG00000030270	tnnt3a	25: 31405266 ~ 31418457 (+)
ENSDARG00000045592	tnni2a.1	25: 31222069 ~ 31236549 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Skeletal muscle cells (cluster: 12)	potential marker	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Muscle cells (cluster: 16)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000045592

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences