DATASET ID: GSE176129 (pdgfrb-positive)


Basic information


Tissue / Organ whole body
Experiment type baseline
Sample 5dpf, FACS-isolated pdgfrb-positive cells
Source dataset ID GSM5356650
Project ID GSE176129
Species Danio rerio

Clustering Result


Function


  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.
  • Marker Relationship


    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    2 Neuron ENSDARG00000014420 (elavl3) protein_coding marker DOI:10.7554/eLife.44431
    7 Epidermal cells ENSDARG00000088514 (and1) protein_coding marker DOI:10.7554/eLife.44431
    8 Chondrocranium cells ENSDARG00000052470 (igfbp2a) protein_coding marker DOI:10.7554/eLife.44431
    9 Epidermal cells ENSDARG00000088514 (and1) protein_coding marker DOI:10.7554/eLife.44431
    10 Chondrocranium cells ENSDARG00000015947 (matn4) protein_coding marker DOI:10.7554/eLife.44431
    11 Smooth muscle cells ENSDARG00000045180 (acta2) protein_coding marker DOI:10.7554/eLife.44431
    12 Smooth muscle cells ENSDARG00000045180 (acta2) protein_coding marker DOI:10.7554/eLife.44431
    13 Proliferating cells ENSDARG00000024488 (top2a) protein_coding marker DOI:10.7554/eLife.44431
    14 Epidermal cells ENSDARG00000092947 (cyt1) protein_coding marker DOI:10.7554/eLife.44431
    15 Ph arch mesench cells ENSDARG00000011956 (dlx4a) protein_coding marker DOI:10.7554/eLife.44431
    16 Chondrocytes ENSDARG00000052437 (mia) protein_coding marker DOI:10.7554/eLife.44431
    17 Brain ventricular zone cells ENSDARG00000015349 (mfge8a) protein_coding marker DOI:10.7554/eLife.44431
    21 Epidermal cells ENSDARG00000088514 (and1) protein_coding marker DOI:10.7554/eLife.4443
    22 Smooth muscle cells ENSDARG00000045180 (acta2) protein_coding marker DOI:10.7554/eLife.44431
    23 Neuron ENSDARG00000014420 (elavl3) protein_coding marker DOI:10.7554/eLife.44431
    24 Skeletal muscle cells ENSDARG00000007344 (tcap) protein_coding marker DOI:10.7554/eLife.44431
    25 Epidermal cells ENSDARG00000092947 (cyt1) protein_coding marker DOI:10.7554/eLife.4443
    28 Pronephros ENSDARG00000040469 (enpp6) protein_coding marker DOI:10.7554/eLife.44431
    29 Epidermal cells ENSDARG00000088514 (and1) protein_coding marker DOI:10.7554/eLife.44431
    29 Epidermal cells ENSDARG00000092947 (cyt1) protein_coding marker DOI:10.7554/eLife.44431
    31 Neutrophils ENSDARG00000057789 (lyz) protein_coding marker DOI:10.7554/eLife.44431
    32 Neuromast cells ENSDARG00000069503 (cldnh) protein_coding marker DOI:10.7554/eLife.44431
    33 Xanthophores ENSDARG00000071475 (aox5) protein_coding marker DOI:10.7554/eLife.44431
    34 Ph arch mesench cells ENSDARG00000011956 (dlx4a) protein_coding marker DOI:10.7554/eLife.44431
    35 Chondrocranium cells ENSDARG00000052470 (igfbp2a) protein_coding marker DOI:10.7554/eLife.44431
    36 Periderm cells ENSDARG00000043128 (cldne) protein_coding marker DOI:10.7554/eLife.44431
    37 Hepatocytes ENSDARG00000037191 (ttr) protein_coding marker DOI:10.7554/eLife.44431
    38 Skeletal muscle cells ENSDARG00000007344 (tcap) protein_coding marker DOI:10.7554/eLife.44431
    40 Oligodendrocytes ENSDARG00000036186 (mbpa) protein_coding marker DOI:10.7554/eLife.44431
    41 Cleithrum cells ENSDARG00000054753 (col10a1a) protein_coding marker DOI:10.7554/eLife.44431
    42 Macrophages ENSDARG00000056874 (lygl1) protein_coding marker DOI:10.7554/eLife.44431
    43 Pancreas cells ENSDARG00000030915 (cpa1) protein_coding marker DOI:10.7554/eLife.44431
    43 Pancreas cells ENSDARG00000043722 (cpa4) protein_coding marker DOI:10.7554/eLife.44431
    43 Pancreas cells ENSDARG00000021339 (cpa5) protein_coding marker DOI:10.7554/eLife.44431
    44 Erythroid cells ENSDARG00000089475 (hbae1.1) protein_coding marker DOI:10.7554/eLife.44431
    45 Melanophores ENSDARG00000003732 (mitfa) protein_coding marker DOI:10.7554/eLife.44431

    Expression



    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)