Fish Single-cell RNA Database

GENE ID: ENSDARG00000054753

Symbol	Location	Gene type	Genome version	Species
col10a1a	17: 15542077 ~ 15546862 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000054753 (col10a1a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000031737	pthlha	4: 612363 ~ 626550 (+)
ENSDARG00000027799	ucmaa	4: 7841627 ~ 7850489 (+)
ENSDARG00000035891	acana	7: 48761646 ~ 48787379 (+)
ENSDARG00000067984	gas1b	5: 32360336 ~ 32363372 (-)
ENSDARG00000058414	bglap	3: 1405504 ~ 1408487 (-)
ENSDARG00000052905	zgc:165423	3: 39540014 ~ 39550089 (+)
ENSDARG00000043923	sox9b	3: 62521041 ~ 62527696 (-)
ENSDARG00000058815	ihhb	6: 7059999 ~ 7082108 (-)
ENSDARG00000019516	sp7	6: 58622831 ~ 58674160 (+)
ENSDARG00000092730	enam	1: 43901966 ~ 43905263 (-)
ENSDARG00000058733	ihha	9: 7358749 ~ 7367278 (+)
ENSDARG00000039871	rpz4	16: 46497149 ~ 46503818 (+)
ENSDARG00000028163	prg4b	20: 34029820 ~ 34039638 (+)
ENSDARG00000059233	runx2b	20: 43994848 ~ 44090660 (-)
ENSDARG00000071048	ccn6	20: 276753 ~ 284865 (-)
ENSDARG00000006797	nt5dc1	20: 474288 ~ 530663 (+)
ENSDARG00000008703	apeh	8: 53747925 ~ 53773539 (-)
ENSDARG00000054753	col10a1a	17: 15542077 ~ 15546862 (-)
ENSDARG00000057792	cx52.7	17: 15744090 ~ 15747296 (-)
ENSDARG00000040261	runx2a	17: 5351922 ~ 5516693 (+)
ENSDARG00000039378	rcn2	18: 26967414 ~ 26977940 (-)
ENSDARG00000003293	sox9a	12: 1947593 ~ 1951284 (-)
ENSDARG00000030215	matn1	19: 43314700 ~ 43338280 (+)
ENSDARG00000100794	mmp13b	15: 33825750 ~ 33834577 (-)
ENSDARG00000015546	alpl	11: 27968834 ~ 28010171 (+)
ENSDARG00000061835	zpld1a	10: 29112756 ~ 29120535 (-)
ENSDARG00000013687	cilp2	22: 18469004 ~ 18485470 (+)
ENSDARG00000002192	aspn	22: 10479965 ~ 10487490 (-)
ENSDARG00000110137	si:dkey-240e12.6	22: 25352530 ~ 25354059 (+)
ENSDARG00000105153	ifitm5	25: 7504314 ~ 7506547 (+)
ENSDARG00000045799	acanb	25: 19213872 ~ 19224298 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type	Hypertrophic chondrocyte (cluster: 5) Hypertrophic chondrocyte (cluster: 7)	marker marker	DOI:10.7554/eLife.16415 DOI:10.7554/eLife.16415
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant	Hypertrophic chondrocyte (cluster: 10)	marker	DOI:10.7554/eLife.16415
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Cleithrum cells (cluster: 41)	marker	DOI:10.7554/eLife.44431
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	Osteoblast (cluster: 7)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	Osteoblast (cluster: 6)	potential marker	NA
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry	Dermal skeleton (cluster: 8)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000054753

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences