CELL TYPE: Macrophages


Distribution of Macrophages in Tissues/Organs

Word Cloud of All Markers


Detail Marker Information in Datasets


Dataset ID Species Tissue / Organ Cell cluster Cell type Experiment type sample Marker gene Marker class Evidence
PRJNA559885 Nothobranchius furzeri caudal fin 8 Macrophages regeneration adult, 2-month old, untreatment csf1r (csf1r) marker DOI:10.1126/science.aaz3090
PRJNA559885 Nothobranchius furzeri caudal fin 8 Macrophages regeneration adult, 2-month old, untreatment marco (marco) marker DOI:10.1126/science.aaz3090
PRJNA610520 (3.5dpf) Danio rerio caudal hematopoietic tissue 14 Macrophages baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. ENSDARG00000077809 (il13) marker DOI:10.1016/j.cell.2008.01.025
PRJNA610520 (4.5dpf) Danio rerio caudal hematopoietic tissue 13 Macrophages baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. ENSDARG00000077809 (il13) marker DOI:10.1016/j.cell.2008.01.025
GSE144944 (fgfr3 +|+) Danio rerio cranial vault 18 Macrophages baseline 1mpf, fgfr3 +/+ ENSDARG00000077809 (il13) marker DOI:10.1002/jbmr.4042
GSE173972 (WT, ezh1+|+) Danio rerio embryo 7 Macrophages baseline 1.25dpf, Kdrl-positive embryos ENSDARG00000055290 (mpeg1.1) marker DOI:10.1016/j.stemcr.2021.05.014
GSE173972 (HET, ezh1+|-) Danio rerio embryo 8 Macrophages hematopoietic 1.25dpf, Kdrl-positive embryos ENSDARG00000055290 (mpeg1.1) marker DOI:10.1016/j.stemcr.2021.05.014
GSE173972 (KO, ezh1-|-) Danio rerio embryo 8 Macrophages hematopoietic 1.25dpf, Kdrl-positive embryos ENSDARG00000055290 (mpeg1.1) marker DOI:10.1016/j.stemcr.2021.05.014
PRJNA797645 Gasterosteus aculeatus embryo 21 Macrophages baseline 70 hpf, whole embryo, untreatment ENSGACG00000001966 (ncf2) marker DOI:10.1038/s41559-021-01580-3
PRJNA608912 (wt_unjuried) Danio rerio heart 6 Macrophages baseline 5mpf, wild type, uninjured ENSDARG00000090783 (mfap4) marker DOI:10.1371/journal.pone.0138949, DOI:10.15252/embr.202152901
PRJNA608912 (wt_unjuried) Danio rerio heart 6 Macrophages baseline 5mpf, wild type, uninjured ENSDARG00000044612 (c1qb) marker DOI:10.15252/embr.202152901
PRJNA608912 (wt_unjuried) Danio rerio heart 6 Macrophages baseline 5mpf, wild type, uninjured ENSDARG00000009087 (cd74a) marker DOI:10.15252/embr.202152901
PRJNA608912 (wt_2dpi) Danio rerio heart 2 Macrophages regeneration 5mpf, wild type, 2 days post injury ENSDARG00000044612 (c1qb) marker DOI:10.15252/embr.202152901
PRJNA608912 (wt_2dpi) Danio rerio heart 2 Macrophages regeneration 5mpf, wild type, 2 days post injury ENSDARG00000009087 (cd74a) marker DOI:10.15252/embr.202152901
PRJNA608912 (wt_2dpi) Danio rerio heart 6 Macrophages regeneration 5mpf, wild type, 2 days post injury ENSDARG00000089362 (grn1) marker DOI:10.15252/embr.202152901
PRJNA608912 (wt_2dpi) Danio rerio heart 9 Macrophages regeneration 5mpf, wild type, 2 days post injury ENSDARG00000044612 (c1qb) marker DOI:10.15252/embr.202152901
PRJNA608912 (wt_7dpi) Danio rerio heart 1 Macrophages regeneration 5mpf, wild type, 7 days post injury ENSDARG00000090783 (mfap4) marker DOI:10.1371/journal.pone.0138949, DOI:10.15252/embr.202152901
PRJNA608912 (wt_7dpi) Danio rerio heart 1 Macrophages regeneration 5mpf, wild type, 7 days post injury ENSDARG00000044612 (c1qb) marker DOI:10.15252/embr.202152901
PRJNA608912 (wt_7dpi) Danio rerio heart 1 Macrophages regeneration 5mpf, wild type, 7 days post injury ENSDARG00000009087 (cd74a) marker DOI:10.15252/embr.202152901
PRJNA608912 (wt_14dpi) Danio rerio heart 6 Macrophages regeneration 5mpf, wild type, 14 days post injury ENSDARG00000090783 (mfap4) marker DOI:10.1371/journal.pone.0138949, DOI:10.15252/embr.202152901
PRJNA608912 (wt_14dpi) Danio rerio heart 6 Macrophages regeneration 5mpf, wild type, 14 days post injury ENSDARG00000044612 (c1qb) marker DOI:10.15252/embr.202152901
PRJNA608912 (wt_14dpi) Danio rerio heart 6 Macrophages regeneration 5mpf, wild type, 14 days post injury ENSDARG00000009087 (cd74a) marker DOI:10.15252/embr.202152901
PRJNA608912 (kit_uninjuried) Danio rerio heart 5 Macrophages regeneration 5mpf, kit mutant, uninjured ENSDARG00000090783 (mfap4) marker DOI:10.1371/journal.pone.0138949, DOI:10.15252/embr.202152901
PRJNA608912 (kit_uninjuried) Danio rerio heart 7 Macrophages regeneration 5mpf, kit mutant, uninjured ENSDARG00000044612 (c1qb) marker DOI:10.15252/embr.202152901
PRJNA608912 (kit_uninjuried) Danio rerio heart 7 Macrophages regeneration 5mpf, kit mutant, uninjured ENSDARG00000009087 (cd74a) marker DOI:10.15252/embr.202152901
PRJNA608912 (kit_2dpi) Danio rerio heart 2 Macrophages regeneration 5mpf, kit mutant, 2 days post injury ENSDARG00000090783 (mfap4) marker DOI:10.1371/journal.pone.0138949, DOI:10.15252/embr.202152901
PRJNA608912 (kit_2dpi) Danio rerio heart 2 Macrophages regeneration 5mpf, kit mutant, 2 days post injury ENSDARG00000044612 (c1qb) marker DOI:10.15252/embr.202152901
PRJNA608912 (kit_2dpi) Danio rerio heart 2 Macrophages regeneration 5mpf, kit mutant, 2 days post injury ENSDARG00000009087 (cd74a) marker DOI:10.15252/embr.202152901
PRJNA608912 (kit_2dpi) Danio rerio heart 5 Macrophages regeneration 5mpf, kit mutant, 2 days post injury ENSDARG00000090783 (mfap4) marker DOI:10.1371/journal.pone.0138949, DOI:10.15252/embr.202152901
PRJNA608912 (kit_2dpi) Danio rerio heart 5 Macrophages regeneration 5mpf, kit mutant, 2 days post injury ENSDARG00000044612 (c1qb) marker DOI:10.15252/embr.202152901
PRJNA608912 (kit_2dpi) Danio rerio heart 9 Macrophages regeneration 5mpf, kit mutant, 2 days post injury ENSDARG00000044612 (c1qb) marker DOI:10.15252/embr.202152901
PRJNA608912 (kit_7dpi) Danio rerio heart 2 Macrophages regeneration 5mpf, kit mutant, 7 days post injury ENSDARG00000090783 (mfap4) marker DOI:10.1371/journal.pone.0138949, DOI:10.15252/embr.202152901
PRJNA608912 (kit_7dpi) Danio rerio heart 2 Macrophages regeneration 5mpf, kit mutant, 7 days post injury ENSDARG00000044612 (c1qb) marker DOI:10.15252/embr.202152901
PRJNA608912 (kit_7dpi) Danio rerio heart 2 Macrophages regeneration 5mpf, kit mutant, 7 days post injury ENSDARG00000009087 (cd74a) marker DOI:10.15252/embr.202152901
PRJNA608912 (kit_14dpi) Danio rerio heart 6 Macrophages regeneration 5mpf, kit mutant, 14 days post injury ENSDARG00000090783 (mfap4) marker DOI:10.1371/journal.pone.0138949, DOI:10.15252/embr.202152901
PRJNA608912 (kit_14dpi) Danio rerio heart 6 Macrophages regeneration 5mpf, kit mutant, 14 days post injury ENSDARG00000044612 (c1qb) marker DOI:10.15252/embr.202152901
PRJNA608912 (kit_14dpi) Danio rerio heart 6 Macrophages regeneration 5mpf, kit mutant, 14 days post injury ENSDARG00000009087 (cd74a) marker DOI:10.15252/embr.202152901
PRJNA415636 (heart, blood) Danio rerio heart, blood 9 Macrophages baseline adult, Zebrabow M, heart and blood ENSDARG00000070542 (mafbb) marker DOI:10.1038/nbt.4124
PRJNA754013 (Choy surface) Astyanax mexicanus hypothalamus 9 Macrophages baseline male, female, adult, untreatment cxcr4 (cxcr4) marker DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Choy surface) Astyanax mexicanus hypothalamus 9 Macrophages baseline male, female, adult, untreatment ncf2 (ncf2) marker DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Molino cave) Astyanax mexicanus hypothalamus 12 Macrophages baseline male, female, adult, untreatment cxcr4 (cxcr4) marker DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Molino cave) Astyanax mexicanus hypothalamus 12 Macrophages baseline male, female, adult, untreatment ncf2 (ncf2) marker DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Pachon cave) Astyanax mexicanus hypothalamus 12 Macrophages baseline male, female, adult, untreatment cxcr4 (cxcr4) marker DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Pachon cave) Astyanax mexicanus hypothalamus 12 Macrophages baseline male, female, adult, untreatment ncf2 (ncf2) marker DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Tinaja cave) Astyanax mexicanus hypothalamus 7 Macrophages baseline male, female, adult, untreatment cxcr4 (cxcr4) marker DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Tinaja cave) Astyanax mexicanus hypothalamus 7 Macrophages baseline male, female, adult, untreatment ncf2 (ncf2) marker DOI:10.1038/s41559-021-01580-3
PRJNA754013 (zebrafish) Danio rerio hypothalamus 7 Macrophages baseline adult, male, female, untreatment ENSDARG00000058389 (ccl19a.1) marker DOI:10.1038/s41559-021-01580-3
PRJNA668529 (3d) Danio rerio olfactory rosette 9 Macrophages disease 3mpf, intranasal 100ng r-Spike 3 days ENSDARG00000055290 (mpeg1.1) marker DOI:10.1182/blood-2010-10-314, DOI:10.1016/j.bbi.2022.03.006
PRJNA668529 (3d) Danio rerio olfactory rosette 10 Macrophages disease 3mpf, intranasal 100ng r-Spike 3 days ENSDARG00000055290 (mpeg1.1) marker DOI:10.1182/blood-2010-10-314, DOI:10.1016/j.bbi.2022.03.006
PRJNA668529 (3d) Danio rerio olfactory rosette 15 Macrophages disease 3mpf, intranasal 100ng r-Spike 3 days ENSDARG00000055290 (mpeg1.1) marker DOI:10.1182/blood-2010-10-314, DOI:10.1016/j.bbi.2022.03.006
PRJNA668529 (3h) Danio rerio olfactory rosette 8 Macrophages disease 3mpf, intranasal 100ng r-Spike 3 hours ENSDARG00000055290 (mpeg1.1) marker DOI:10.1182/blood-2010-10-314120, DOI:10.1016/j.bbi.2022.03.006
PRJNA668529 (3h) Danio rerio olfactory rosette 10 Macrophages disease 3mpf, intranasal 100ng r-Spike 3 hours ENSDARG00000055290 (mpeg1.1) marker DOI:10.1182/blood-2010-10-314120, DOI:10.1016/j.bbi.2022.03.006
PRJNA668529 (3h) Danio rerio olfactory rosette 11 Macrophages disease 3mpf, intranasal 100ng r-Spike 3 hours ENSDARG00000055290 (mpeg1.1) marker DOI:10.1182/blood-2010-10-314120, DOI:10.1016/j.bbi.2022.03.006
PRJNA668529 (control) Danio rerio olfactory rosette 8 Macrophages baseline 3mpf, intranasal PBS ENSDARG00000055290 (mpeg1.1) marker DOI:10.1182/blood-2010-10-314120, DOI:10.1016/j.bbi.2022.03.006
PRJNA668529 (control) Danio rerio olfactory rosette 12 Macrophages baseline 3mpf, intranasal PBS ENSDARG00000055290 (mpeg1.1) marker DOI:10.1182/blood-2010-10-314120, DOI:10.1016/j.bbi.2022.03.006
GSE162787 (male) Oryzias latipes pituitary 12 Macrophages baseline male, adult, untreatment ENSORLG00000000021 marker DOI:10.1038/s41597-021-01058-8
GSE162787 (female) Oryzias latipes pituitary 12 Macrophages baseline female, adult, untreatment ENSORLG00000000021 marker DOI:10.1038/s41597-021-01058-8
PRJNA415636 (primary pancreatic islet) Danio rerio primary pancreatic islet 18 Macrophages baseline adult, Zebrabow M, primary pancreatic islet ENSDARG00000059294 (marco) marker DOI:10.1038/nbt.4124
GSE152982 (wild type) Danio rerio trunk 17 Macrophages baseline 1.25dpf, untreatment ENSDARG00000090783 (mfap4) marker DOI:10.1371/journal.pone.0254024
GSE152982 (wild type) Danio rerio trunk 17 Macrophages baseline 1.25dpf, untreatment ENSDARG00000056874 (lygl1) marker DOI:10.1371/journal.pone.0254024
GSE159709 (melanoma) Danio rerio tumor 4 Macrophages disease adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells ENSDARG00000054610 (coro1a) marker DOI:10.1038/s41467-021-26614-z
GSE176129 (pdgfrb-positive) Danio rerio whole body 42 Macrophages baseline 5dpf, FACS-isolated pdgfrb-positive cells ENSDARG00000056874 (lygl1) marker DOI:10.7554/eLife.44431
GSE158099 (WT) Danio rerio whole body 13 Macrophages baseline 2.5dpf, cd41:GFPlow-WT ENSDARG00000055290 (mpeg1.1) marker DOI:10.1182/bloodadvances.2020003969
GSE158099 (runx1 -|-) Danio rerio whole body 8 Macrophages hematopoietic 2.5dpf, cd41:GFPlow-runx1-/- ENSDARG00000055290 (mpeg1.1) marker DOI:10.1182/bloodadvances.2020003969
GSE158099 (WT) Danio rerio whole body 6 Macrophages baseline 6dpf, cd41:GFPlow-WT ENSDARG00000013771 (ctss2.2) marker DOI:10.1182/bloodadvances.2020003969
GSE158099 (WT) Danio rerio whole body 7 Macrophages baseline 10dpf, cd41:GFPlow-WT ENSDARG00000013771 (ctss2.2) marker DOI:10.1182/bloodadvances.2020003969
GSE158099 (WT) Danio rerio whole body 7 Macrophages baseline 16dpf, cd41:GFPlow-WT ENSDARG00000013771 (ctss2.2) marker DOI:10.1182/bloodadvances.2020003969
GSE158099 (WT) Danio rerio whole body 11 Macrophages baseline 16dpf, cd41:GFPlow-WT ENSDARG00000077809 (il13) marker DOI:10.1182/bloodadvances.2020003969
GSE158099 (runx1 -|-) Danio rerio whole body 7 Macrophages hematopoietic 16dpf, cd41:GFPlow-runx1-/- ENSDARG00000013771 (ctss2.2) marker DOI:10.1182/bloodadvances.2020003969
GSE158099 (runx1 -|-) Danio rerio whole body 10 Macrophages hematopoietic 16dpf, cd41:GFPlow-runx1-/- ENSDARG00000013771 (ctss2.2) marker DOI:10.1182/bloodadvances.2020003969

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